Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00055 ATGGCGCTTGTAATGCACAAAGACTCATCAAACCAACAGATGGATACAAGCAAATACGTACGGTATACACCTGAACAAGTTGAGGCATTAGAGAGAGTCTATGCAGAATGTCCAAAGCCCAGTTCTCTTAGAAGGCAGCAGCTCATTAGAGAGTGCCCAATCCTTTCTAATATTGAGCCCAAACAGATCAAAGTTTGGTTTCAAAACCGCAGATGCCGGGAGAAGCAGAGGAAGGAATCTTCTCGCCTCCAGAGCGTGAACCGAAAGTTGTCTGCGATGAACAAGTTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCCCATTTAGTGTATGAGAATGGATTTATGCGCCAGCAACTGCATAGTACATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAATCCAAATCCTCAGCATTCTAATAGGGATGCAAACAACCCAGCTGGTCTTCTTGCAATAGCTGAGGAGACCATGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCGCGAGCCTGTGGTCTTGTTAGTCTAGAGCCAATGAAGGTTGCCGAAATTCTTAAAGATCGCCTTTCATGGTATCGTGACTGTCGCTGTCTTAATGTTTTAAGTGTAATCCCTACTGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACTTACGCTCCAACAACATTAGCAGCTGCACGTGACTTCTGGACCATGAGATACACAACAAGTTTAGAAGATGGCAGTCTAGTGGTCTGTGAAAGGTCATTAACCACTTCAAGTGGTGGACCAGCAGGGCCTCCGCCATCTACTTTTGTGAGAGCTGAAATGCTTCCTAGTGGTTATCTAATACGAGCATGCGAGGGTGGTGGATCTATTATTCACATTGTTGACCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGACCGCTTTACGAGTCATCCAAGATCCTTGCTCAGAAAATGACGATCGCTGCATTGCGTCACATTAGACAAATTGCACAAGAGACTAATGGAGAGATCCAATATAGTGGGGGACGTCAACCAGCTGTATTACGAACGTTTGGTCAGAAACTCTGCAGGTTGTGTTTGCATGAACGTAACTGGTTTATTTACTATGGAGAAAATAGTCCTTAG 1266 45.73 MALVMHKDSSNQQMDTSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGFMRQQLHSTSGTTTDNSCESVVMSGQPQQQQNPNPQHSNRDANNPAGLLAIAEETMAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPMKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLTTSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETNGEIQYSGGRQPAVLRTFGQKLCRLCLHERNWFIYYGENSP 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 353870 356250 + Carg14967-RA Car07g00055 151289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00055 421 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Car07g00055 421 Pfam START domain 167 374 IPR002913 GO:0008289
Car07g00055 421 Coils Coil 83 107 - -
Car07g00055 421 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Car07g00055 421 MobiDBLite consensus disorder prediction 122 159 - -
Car07g00055 421 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00055 Car-Chr7:353870 Car12g00733 Car-Chr12:6939343 0 dispersed
Car13g00384 Car-Chr13:6380963 Car07g00055 Car-Chr7:353870 0 wgd
Car03g01305 Car-Chr3:9972929 Car07g00055 Car-Chr7:353870 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3781 PF01852 START 3.00E-50 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00055 K09338 - csv:101210154 763.451