Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g00131 | ATGTCTGATTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAACCGTCAAGTCACTTTCTGTAAGAGACGAAATGGACTTCTCAAAAAGGCTTATGAGCTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAACCCGTGGCCGCCTCTATGAGTATGCTAACAACAGCGTGAAGACAACAATTGATAGATACAAAAAGGCATCTTCAAATTCTCCAAACACAGGATCTACTTCTGAAACTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTGCGTGTTCAGATTGGTAATTTGCAGAACTCAAACAGGAACATGCTTGGTGATTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGTCTTGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGATCCAAAAAGAATGAACTCCTCTTTGCTGAAATCGAGTACATGCGGAAAAGGGAGTTTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTCAACATGATGGAAGGAGGAGAATTTGAGCTGATGCAATCTCATCCCTACGATCCAAGAGACTTCTTCCAAGTCAACGGCTTACAACACAATCAACAGTATCCACGTCAAGACAACATGTCTCTCCAGTTAGTATAA | 693 | 40.4 | MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKTTIDRYKKASSNSPNTGSTSETNTQFYQQEAAKLRVQIGNLQNSNRNMLGDSLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREFDLHNNNQLLRAKIAESERNVNMMEGGEFELMQSHPYDPRDFFQVNGLQHNQQYPRQDNMSLQLV | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 809346 | 813936 | - | Carg23097-RA | Car07g00131 | 151365 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g00131 | 230 | ProSiteProfiles | MADS-box domain profile. | 9 | 69 | IPR002100 | GO:0003677|GO:0046983 | |
| Car07g00131 | 230 | Pfam | K-box region | 91 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
| Car07g00131 | 230 | ProSitePatterns | MADS-box domain signature. | 11 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
| Car07g00131 | 230 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 18 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
| Car07g00131 | 230 | Coils | Coil | 132 | 152 | - | - | |
| Car07g00131 | 230 | ProSiteProfiles | K-box domain profile. | 95 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car07g00131 | Car13g00458 | CCT | |
| Car03g01215 | Car07g00131 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car07g00131 | Car-Chr7:809346 | Car20g00220 | Car-Chr20:1276126 | 2.43E-63 | dispersed | |
| Car20g00823 | Car-Chr20:5444290 | Car07g00131 | Car-Chr7:809346 | 6.91E-20 | dispersed | |
| Car03g00044 | Car-Chr3:525038 | Car07g00131 | Car-Chr7:809346 | 1.69E-39 | transposed | |
| Car14g00750 | Car-Chr14:4195040 | Car07g00131 | Car-Chr7:809346 | 1.35E-14 | transposed | |
| Car13g00458 | Car-Chr13:6936586 | Car07g00131 | Car-Chr7:809346 | 1.82E-104 | wgd | |
| Car03g01215 | Car-Chr3:9481463 | Car07g00131 | Car-Chr7:809346 | 3.45E-163 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3787 | PF01486 | K-box | 2.60E-28 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g00131 | K09264 | - | csv:101221430 | 400.208 |