Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00131 ATGTCTGATTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAACCGTCAAGTCACTTTCTGTAAGAGACGAAATGGACTTCTCAAAAAGGCTTATGAGCTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAACCCGTGGCCGCCTCTATGAGTATGCTAACAACAGCGTGAAGACAACAATTGATAGATACAAAAAGGCATCTTCAAATTCTCCAAACACAGGATCTACTTCTGAAACTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTGCGTGTTCAGATTGGTAATTTGCAGAACTCAAACAGGAACATGCTTGGTGATTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGTCTTGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGATCCAAAAAGAATGAACTCCTCTTTGCTGAAATCGAGTACATGCGGAAAAGGGAGTTTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTCAACATGATGGAAGGAGGAGAATTTGAGCTGATGCAATCTCATCCCTACGATCCAAGAGACTTCTTCCAAGTCAACGGCTTACAACACAATCAACAGTATCCACGTCAAGACAACATGTCTCTCCAGTTAGTATAA 693 40.4 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKTTIDRYKKASSNSPNTGSTSETNTQFYQQEAAKLRVQIGNLQNSNRNMLGDSLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREFDLHNNNQLLRAKIAESERNVNMMEGGEFELMQSHPYDPRDFFQVNGLQHNQQYPRQDNMSLQLV 230
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 809346 813936 - Carg23097-RA Car07g00131 151365
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car07g00131 230 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Car07g00131 230 Pfam K-box region 91 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g00131 230 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Car07g00131 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Car07g00131 230 Coils Coil 132 152 - -
Car07g00131 230 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Car07g00131 Car13g00458 CCT
Car03g01215 Car07g00131 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00131 Car-Chr7:809346 Car20g00220 Car-Chr20:1276126 2.43E-63 dispersed
Car20g00823 Car-Chr20:5444290 Car07g00131 Car-Chr7:809346 6.91E-20 dispersed
Car03g00044 Car-Chr3:525038 Car07g00131 Car-Chr7:809346 1.69E-39 transposed
Car14g00750 Car-Chr14:4195040 Car07g00131 Car-Chr7:809346 1.35E-14 transposed
Car13g00458 Car-Chr13:6936586 Car07g00131 Car-Chr7:809346 1.82E-104 wgd
Car03g01215 Car-Chr3:9481463 Car07g00131 Car-Chr7:809346 3.45E-163 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3787 PF01486 K-box 2.60E-28 No_clan Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00131 K09264 - csv:101221430 400.208