Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00176 ATGGCTTCCTCAAACAGACACTGGCCTAGCATGTTCAAGTCCAAGCCCTGCAATTCTCACCACCAATGGCAGCATGACATCAACCCAAATCTCTCTTCTTCCACTGCCACTTGCCTCAGATCTGCTCCTTATGCTACAGGTTCTTCTTCTTTTGGTGGGTGTGAAGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAACCAGAACAAATTCGGATTCTTGAAGCAATTTTCAATTCCGGGATGGTGAATCCTCCAAGAGATGAAATTAGAAAAATTAGAGCTCAATTGCAGGAGTATGGACAAGTGGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAAAGCAAACTCCGCCATATCCAAAACTCCAAATCTAATAATAATCACAATTCCCAAACCACCACTGCTCCTTTACCATCTCCTATTCCTCCCATCGCCACTGCCACCATCACCACCGCCGCCGCCGCCGCCACAACTTGTTCTTCCTCTTCTTCTTCCGACAAATCTTCTCCAATATCAGCACCCATCAAAACTTTTAGCTCCAATTCAATGACCCAGAACTACCTTCCACAACTCACCAACGAGCTCATGCCTGAACCCTTTTTCTTCCCGGTGTCACAGACCGGCGGCGGTGGCAGCGGTGGAAGCTCTAATTTGAGTCAAGGGTTTTGCTTGTCGGAGCTTTGTAGTGTAGTGCAGCAAGTGCCTGAAGATGGGGTTGTTGGGCCTTGCACAAGCCTGTTGCTGAGTGAGATTATGAACCCAACTGAGGCTTCAAAAAAAGATTTGGATGAGGACAAGATCACGGTGAAGTTGCCGCCTCCATTCATGAATTATCATCCTGTTTTCACTCCCTCCACTGATAACATTCTTCCACCAACCACTATTTCCACCGCCCTCACCACTCTCCCACCTCCTTCCCATACAATTCATCAAGGTGTAGGTGAAGTTTATGGATTAGGTCAAAGCTGTGTAGGGAAGTCAACAGTGTTCATCAATGGTGTGGCGTTCGAGGTGGGTTCTGGTGCGTTCAATGTCCGGGAGGCTTTTGGTGATGAAGCTGTTCTGCTTCACTCCTCTGGTCAGCCTGTTCTCACTAATGAATGGGGCCTCACTCTCCACTCACTCCAACATGGCGCCTCTTATTATCTTGTTAGTTCCATCATATGCCTCTCTTGCCTTTCTTCTATACCTTTCTTGTTTTGA 1227 46.62 MASSNRHWPSMFKSKPCNSHHQWQHDINPNLSSSTATCLRSAPYATGSSSFGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKSKLRHIQNSKSNNNHNSQTTTAPLPSPIPPIATATITTAAAAATTCSSSSSSDKSSPISAPIKTFSSNSMTQNYLPQLTNELMPEPFFFPVSQTGGGGSGGSSNLSQGFCLSELCSVVQQVPEDGVVGPCTSLLLSEIMNPTEASKKDLDEDKITVKLPPPFMNYHPVFTPSTDNILPPTTISTALTTLPPPSHTIHQGVGEVYGLGQSCVGKSTVFINGVAFEVGSGAFNVREAFGDEAVLLHSSGQPVLTNEWGLTLHSLQHGASYYLVSSIICLSCLSSIPFLF 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1016031 1017641 + Carg07752-RA Car07g00176 151410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00176 408 MobiDBLite consensus disorder prediction 122 152 - -
Car07g00176 408 MobiDBLite consensus disorder prediction 127 143 - -
Car07g00176 408 Pfam Homeodomain 62 121 IPR001356 GO:0003677
Car07g00176 408 MobiDBLite consensus disorder prediction 45 67 - -
Car07g00176 408 ProSiteProfiles 'Homeobox' domain profile. 58 123 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00176 - - - bhj:120074379 561.992
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g01165 Car07g00176 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00058 Car-Chr6:380691 Car07g00176 Car-Chr7:1016031 2.48E-17 dispersed
Car07g00176 Car-Chr7:1016031 Car14g00419 Car-Chr14:2139594 1.14E-15 dispersed
Car03g01165 Car-Chr3:9289111 Car07g00176 Car-Chr7:1016031 1.04E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g165 . . Bda02g00504 . . Bpe01g00455 . . . . Cma03g01305 Cma07g00209 Car03g01165 Car07g00176 . . Cpe10g00163 Bhi03g00342 . . . . . . Cla01g02289 Cam01g2401 Cec04g2047 Cco04g2125 Clacu01g2422 Cmu01g2286 Cre04g1954 . . Cone6ag0982 Cone9ag0982 Lsi01g00272 Csa06g03668 . Cme08g00256 . Blo14g00416 . . . . . . . Cmo03g01301 Cmo07g00209 . . . . Cpe19g01046 . . . . . . . . . . . . . . . . . Chy02g00262 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car06g00058 . 4 252 Wox Gene Family AT3G03660 52.5 4.1e-53 205.7
Car14g00419 . 14 245 Wox Gene Family AT3G03660 50.4 9.2e-45 177.9
Car16g01199 . 1 275 Wox Gene Family AT4G35550 51.0 3.9e-71 265.4
Car06g00127 . 26 263 Wox Gene Family AT4G35550 53.7 5.0e-66 248.4
Car09g00039 CCT 1 191 Wox Gene Family AT4G35550 60.5 1.8e-55 213.4
Car01g01590 CCT 1 162 Wox Gene Family AT4G35550 67.5 1.2e-54 210.7
Car06g00127 . 26 165 Wox Gene Family AT1G20700 55.9 3.0e-39 159.1
Car01g01590 CCT 38 169 Wox Gene Family AT1G20700 58.5 8.8e-39 157.5
Car05g00145 CCT 5 170 Wox Gene Family AT1G46480 60.9 7.4e-48 187.6
Car12g00518 CCT 1 134 Wox Gene Family AT1G46480 62.8 1.5e-43 173.3
Car12g00523 . 5 138 Wox Gene Family AT1G46480 61.3 7.2e-43 171.0
Car07g00176 CST 1 392 Wox Gene Family AT2G33880 50.2 1.8e-64 243.8
Car05g00145 CCT 5 170 Wox Gene Family AT1G46480 60.9 7.4e-48 187.6
Car12g00518 CCT 1 134 Wox Gene Family AT1G46480 62.8 1.5e-43 173.3
Car12g00523 . 5 138 Wox Gene Family AT1G46480 61.3 7.2e-43 171.0
Car07g00176 CST 1 392 Wox Gene Family AT2G33880 50.2 1.8e-64 243.8
Car06g00058 . 4 252 Wox Gene Family AT3G03660 52.5 4.1e-53 205.7
Car14g00419 . 14 245 Wox Gene Family AT3G03660 50.4 9.2e-45 177.9
Car16g01199 . 1 275 Wox Gene Family AT4G35550 51.0 3.9e-71 265.4
Car06g00127 . 26 263 Wox Gene Family AT4G35550 53.7 5.0e-66 248.4
Car09g00039 CCT 1 191 Wox Gene Family AT4G35550 60.5 1.8e-55 213.4
Car01g01590 CCT 1 162 Wox Gene Family AT4G35550 67.5 1.2e-54 210.7
Car06g00127 . 26 165 Wox Gene Family AT1G20700 55.9 3.0e-39 159.1
Car01g01590 CCT 38 169 Wox Gene Family AT1G20700 58.5 8.8e-39 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008426 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3794 PF00046 Homeodomain 2.00E-14 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00176 Car_Chr07 FPKM 4.378717 5.289671 0.572941 0.341315 6.098653 6.821084 6.321959 0.320307 0.047353 0.299338