Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00253 ATGTTCGATCCGGATATGTTCGATACGCATCATCATATGCTTGATATGACCTTTAACACTTCAGAAAACGAATTGGAGAATGTTAGAGACGATGATTTTGAGGCCAAATCGGGAGCTGAAATGTTAGAGGAAGCTTGTGGGAGTGACCAACAACGCTCCAAGAAGAAGCGCTATAATCGCCATACGCAGCACCAAATCCAAGAAATGGAAGCATTCTTTAAGGAATGTCCTCACCCAGATGACAAGCAGAGAATGGAGCTGAGCCGCGAGCTGGGTTTGGAGCCTTTGCAAGTCAAGTTTTGGTTCCAGAACAAGCGTACCCAAATGAAGGCCCAACACGAAAGACATGAAAATGCAATGTTAAAAGCCGATAATGAAAAGCTTCGAGCGGAGAATATTCGGTACAGAGAAGCATTCGCCCATTCAACATGCCCCAACTGCGGATCCTCCACAGCCCTCGGCGAAATGTCCTTCGAAGATCAACATTTGCGTATCGAGAATTCCCGTCTGCGAGATGAGATCGACCGAATGAACGGATATGCCCCAAAATGTGGAAAGCCACTGCCTTCTTCCTATTACCACCTCCCCTCCAACGCCCCCACGCGATCTCTCGACTTGGGCATCACAAATTTCGGTCAACAGTCGTGTTTCGTCGGAGAAATGTACGGAACCGCCGACTTTCTCCGCTCCATTTCCAGACCTTCTGAAGCCGACAAGCCGGTCATTGTGGAGTTGGCCGTTTCCGCTATGGATGAACTGACCCGGATGGCTCAGGCTGGGGAACCCTTGTGGGTTCCGGGTGATACCAAGTCCAGTGAAGTGGTGCTTAATGAATCCGAGTATTTGACCAGTTTCCGAGGCGGAATTGGGCCCAAATCGTTGGGCTTGAGAACTGAAGCTTCGCGTGTTTCGGCTATTGTGTTCATGAACCACGTGAAGCTTGTGGATATTTTTATGGATGCCACGCAATGGTCGACTGTGTTCTGTGGGATTGTTTCGAGAGCATCCACAGTGGAGGTTCTTTCCGCCGGCCTTCCTGGAAACTGCAACGGGGCCTTGCATGTGATGAGCGCTGAATTCCAAGTCCCATCGCCGCTGGTTCCGACTCGCGAAAACTACTTCGTAAGATATTGCAAACAGCACAGCGATGGCACATGGGCTGTGGCTGATGTTTCCTTGGACACTTTGACCCCTTCTCCCATCCCAAAGGGCCGACGGAGACCCTCTGGTTGTTTAATTCAAGAATTGCCCAACGGCTACTCTAAGATCACTTGGGTGGAACATGTAGAGGTCGACGAAACTGGCGTCCCTTCAATGTATAGACCGCTCGTTAATTCAGGCCTCGCTTTTGGAGCTAAACGATGGGTCGCTACGCTTGATAGGCAGTGTGAACGTCTAGCCACTTCCATGGCAACCACCATAGCGACCGGCGAATTACGCGTGATGTCGAGTATTGAGGGAAGGAAGAGTATGTTGAAGCTGGCTGAAAGAATGGTGACGAGCTTTTGCGCTGGCGTCGGCGCGTCCAGTATACACGCTTGGACGGCTTTGCCGGCCGCCGGCAGTGATGATGTTCGTGTTGTGACGAGGAAAAGCACCGATGAACCAGGGCGTCCACCTGGTGTTGTGCTTAGCGCGGCTACCTCTTTTTGGATCCCTGTTTCTCCTAAGGTTGTGTTTGATTTCCTTCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAACAGGGGCTTGGTTCAGGAAATGGCAAACATAGCCAACGGCCGCCACTCTGGAAATTGTGTCTCGTTGCTTCGTGTCAATAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAGAGCTGCACCGATTCCACAGGATCATACGTTGTTTATGCTCCGGTGGACACTGTTGCAATGAACGTGGTGCTAAGCGGTTGCGACCCGGATTACGTGGCGCTTTTACCATCGGGATTCGCCATACTTCCCGACGGACCCGCCGGCAGCAACGGCGGAGGAATTCTGGAGGTGGGGTCCGGTGGGTCACTAATCACTGTTGCATTTCAAATCCTGGTTGATTCAGTTCCAACGGCGAGACTTTCAATTGGATCGGTTGCCACCGTTAACAGTCTGATTAAGTGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGTGAAACCCATGATTAA 2181 50.89 MFDPDMFDTHHHMLDMTFNTSENELENVRDDDFEAKSGAEMLEEACGSDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAMLKADNEKLRAENIRYREAFAHSTCPNCGSSTALGEMSFEDQHLRIENSRLRDEIDRMNGYAPKCGKPLPSSYYHLPSNAPTRSLDLGITNFGQQSCFVGEMYGTADFLRSISRPSEADKPVIVELAVSAMDELTRMAQAGEPLWVPGDTKSSEVVLNESEYLTSFRGGIGPKSLGLRTEASRVSAIVFMNHVKLVDIFMDATQWSTVFCGIVSRASTVEVLSAGLPGNCNGALHVMSAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVADVSLDTLTPSPIPKGRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPSMYRPLVNSGLAFGAKRWVATLDRQCERLATSMATTIATGELRVMSSIEGRKSMLKLAERMVTSFCAGVGASSIHAWTALPAAGSDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVSPKVVFDFLRKEKSRSEWDILSNRGLVQEMANIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPAGSNGGGILEVGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRETHD 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1378530 1384172 + Carg07831-RA Car07g00253 151487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00253 726 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Car07g00253 726 Gene3D - 249 470 IPR023393 -
Car07g00253 726 Coils Coil 106 138 - -
Car07g00253 726 Pfam START domain 245 465 IPR002913 GO:0008289
Car07g00253 726 SUPERFAMILY Bet v1-like 487 717 - -
Car07g00253 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 723 IPR042160 -
Car07g00253 726 ProSiteProfiles START domain profile. 235 468 IPR002913 GO:0008289
Car07g00253 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 21 723 - -
Car07g00253 726 SMART START_1 244 465 IPR002913 GO:0008289
Car07g00253 726 CDD homeodomain 54 113 IPR001356 GO:0003677
Car07g00253 726 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Car07g00253 726 SUPERFAMILY Bet v1-like 237 466 - -
Car07g00253 726 SMART HOX_1 53 116 IPR001356 GO:0003677
Car07g00253 726 SUPERFAMILY Homeodomain-like 43 112 IPR009057 -
Car07g00253 726 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Car07g00253 726 CDD START_ArGLABRA2_like 239 464 - -
Car07g00253 726 Gene3D - 42 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00253 Car-Chr7:1378530 Car17g00018 Car-Chr17:71992 0 dispersed
Car11g01520 Car-Chr11:12241544 Car07g00253 Car-Chr7:1378530 0 wgd
Car13g00584 Car-Chr13:7664985 Car07g00253 Car-Chr7:1378530 0 wgd
Car19g00719 Car-Chr19:8221874 Car07g00253 Car-Chr7:1378530 0 wgd
Car02g00137 Car-Chr2:798512 Car07g00253 Car-Chr7:1378530 0 wgd
Car20g00526 Car-Chr20:2899070 Car07g00253 Car-Chr7:1378530 0 wgd
Car03g00472 Car-Chr3:5043138 Car07g00253 Car-Chr7:1378530 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3811 PF01852 START 3.20E-52 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00253 K09338 - csv:101209093 1247.26