Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00275 ATGGACAAAGGATGGGGTCTTACCCTTCGTGATTCCGACCACTCTATTGGGTTCTTCTCAAACAAGCCACCCCCATCCACTGTCAATTCTTTTCACAGCGTTATGTTCCAAGGTATTGATTTTCCCGGGAAACTTGGCCGGACTGACGACCACAAGCCTGCTCTGCCGCTTCCCGATCACACCCGGTTACCCGTCAACGAGGTCGACTTTTTTTCCGATAACAAAAGGGTGGTTGATGATAGGGAGGATGAAGACTCCAAACCACCGGTTAATATCATCGCCACCGCTGTCAATAAAGACCACAACAATTTCACTGCTCCCACAACTGCCTTCAATCGTGTTAATACTGGTTTGCATCTGTTAACTGCGAACACCGGAAGCGATCAATCGACGGTGGATGATGGGATTTCATCGGATGGAGAAGATAAACGAGCCAAAAACGAGCTAGCGCAGCTTCAAGTGGAGCTTCAGCGTATGAACGCCGAGAATCACAAGCTGAGGGACATGCTAAGCCATGTGAGAAACAACTACACTACCCTACAAATGCATATCTCCACCTTTATGCAACAGCAACAACAACAAAATCAGGCCTTGGAATCCGCTCATGAACGACAGCCCACGGAAAAACATGATCAAGTTGGGAAGGTGGTAATTCCGAGGCAATTTATGGATCTGGGACCCAGTGGGAAGACAGGGGAAGGCGATCGTGAATTATTCCATTCATCATCGGATGAAAGAACTGGTTCTGGGTCTCCATTGAACAACACAGAAACTGCCTCCAAAAAGAGCACCGGAAGAGACCAGGAAATGGGTCCTTCCGATCAGGAGAATTCCAATTTACGATCAGATGGAAAAAGATCCATGGGTAGAGAAGAAAGCCCAGAGTCAGAATCTCACGGGTGGGGTGGTCCTAATAAAGCCCCCAGATTGAACTCTGCTTCTAAACCACTTGATCAACAATCCACCGAAGCCACCATGAGAAAAGCCCGTGTCTCAGTCCGTGCCCGATCAGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCATGTCCACGGGCGTATTATCGGTGCACAATGGCAGTGGGTTGCCCTGTTCGGAAACAAGTTCAACGTTGCGCTGAAGACACGACTATATTGATAACAACCTATGAGGGTAACCACAATCACCCACTTCCGCCGGCTGCGATGGCCATGGCGTCCACCACGACGGCGGCGGCTAGCATGTTGTTGTCAGGGTCCATGTCAAGTGCGGACCATAATCTAATGAACCCAAATTTATTGGCTCGAGCCATACTCCCATGTTCCTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACCCCGAACCCATTGCAGTTCCAAAGACCAGCACCCACGCCGTTCCACGTGCCGTTCGAAGGAGGACAACCACCGTCTGCCGCCGCCCAATTGCCGCAGGTTTTGGGGCAAGCGCTATACAATCAATCAAAATTCTCGGGGCTACAGCTCTCTCATGATATGGGGGCCAATTCCTCCCATTTGGGTCACCACCAAATTTCCCAACCGGCCGTGGCATCATCCCAGCCTAGTGGTGCTTCTTTTGCCGACACGTTAAGTGCCGCCACCGCCGCTATCACCGCGGATCCGAACTTCACAGCCGCTCTAGCCGCCGCTATCTCCTCCATCATCGGCGGAGGTCATTCAAATAATAATAACACCACCCCCACCAATACTACGTCTACATCAAACAACAACGGAAGCAGCAACAACAACAACACCAAAATTAGCAGTTTCCCAGGAAAGTAG 1848 50.0 MDKGWGLTLRDSDHSIGFFSNKPPPSTVNSFHSVMFQGIDFPGKLGRTDDHKPALPLPDHTRLPVNEVDFFSDNKRVVDDREDEDSKPPVNIIATAVNKDHNNFTAPTTAFNRVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVRNNYTTLQMHISTFMQQQQQQNQALESAHERQPTEKHDQVGKVVIPRQFMDLGPSGKTGEGDRELFHSSSDERTGSGSPLNNTETASKKSTGRDQEMGPSDQENSNLRSDGKRSMGREESPESESHGWGGPNKAPRLNSASKPLDQQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAPTPFHVPFEGGQPPSAAAQLPQVLGQALYNQSKFSGLQLSHDMGANSSHLGHHQISQPAVASSQPSGASFADTLSAATAAITADPNFTAALAAAISSIIGGGHSNNNNTTPTNTTSTSNNNGSSNNNNTKISSFPGK 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1454524 1456886 - Carg07853-RA Car07g00275 151509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00275 615 ProSiteProfiles WRKY domain profile. 337 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car07g00275 615 Coils Coil 142 176 - -
Car07g00275 615 MobiDBLite consensus disorder prediction 125 144 - -
Car07g00275 615 Pfam WRKY DNA -binding domain 344 401 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car07g00275 615 MobiDBLite consensus disorder prediction 523 546 - -
Car07g00275 615 MobiDBLite consensus disorder prediction 188 336 - -
Car07g00275 615 MobiDBLite consensus disorder prediction 244 261 - -
Car07g00275 615 MobiDBLite consensus disorder prediction 279 297 - -
Car07g00275 615 MobiDBLite consensus disorder prediction 312 327 - -
Car07g00275 615 MobiDBLite consensus disorder prediction 579 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00275 Car-Chr7:1454524 Car10g00169 Car-Chr10:815310 2.88E-50 dispersed
Car11g01502 Car-Chr11:12089406 Car07g00275 Car-Chr7:1454524 1.57E-138 wgd
Car19g00707 Car-Chr19:8146244 Car07g00275 Car-Chr7:1454524 9.12E-93 wgd
Car03g00498 Car-Chr3:5123695 Car07g00275 Car-Chr7:1454524 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3813 PF03106 WRKY 4.60E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00275 - - mcha:111012275 838.18