Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00281 ATGGATGGTCCTGGCGGAAGTTCTTCAGGTATGATGAATTTTGGAGATCAAAATAATAGTAATAATGGGTTATGTTCTTCCATGATGATGATGATGCCTTTAATGTCTTCTCACCACCACCACCACCACCATCAAGGAGATGCATGTAATCCATTTCCTCCTCTTCCTTCTCCTAATTACACTACCAACAACATCAACAACACCAACACTTCTTCTTCTTCTAACCCTATTTGTTACTTCATGGATGAACACACCACCACCACCACCAACAACAACAATGATAATGGGTGTTGTAATGCAAATTCGTCTTCTTGTGAATTGAAGGCCAAAATTATGGGTCATCCTCACTACCACCGCCTCCTTGCTGCCTATGTCAATTGTCGAAAGGTGGGGGCGCCGCCGGATGTGGTGGCGAGGCTTGAAGGAGCGTGTGCATCTGCACTCACAATGAGTGGTACGTCTTGTACGGGGTGTATTGGTGAAGATCCGGCTCTTGACCAGTTCATGGAAGCTTATTGCGAGATGCTCACTAAATATGAACAAGAACTTTCCAAACCCTTCAGGGATGCCATGCTTTTTCTTCACCGAATTGAGTGCCAATTCAAAGCCCTCTCCATTTCCTCCTCCGACGCTGGTTATCATCTAGATGTTTGTGTCAACTGTGATGTAGAACTGCAGGAATCCATCTGCCTCAACTGCAACCGAACCGATCAATGGGTTAATAACCATGGGGTGCTGATTTACGATAACATGTATGTTCGAGTTCATTTGATGGCTGATATATTGTATGCATACCACCCAGTTTGTGGTGAGGCATTTGAAAGGAATGGTTCATCTGAAGAGGAAGTTGATATCAATGGCCACTCTATCGACCCTCAAGCCGAAGACCGTGAACTGAAAGGTCAGCTCCTCCGCAAGTACAGTGGATGCTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTGCCTAAGGAGGCCAGACAACAGCTCCTTGACTGGTGGAGTAGACATTACAAGTGGCCTTATCCATCTGAATCACAGAAGCTAGCATTGGCTCAATCCACTGGGTTGGATCAAAAGCAAATCAACAACTGGTTCATCAACCAAAGGAAAAGGCACTGGAAACCCTCTGAAGATATGCAGTTCGTGGTGATGGATGGTGGGCATCCGCAGTATTACATGGACACCGTGTTGGGCAATCCTTTTCCCTTGGATATCTCTCCCACTCTACTCTAA 1251 45.56 MDGPGGSSSGMMNFGDQNNSNNGLCSSMMMMMPLMSSHHHHHHHQGDACNPFPPLPSPNYTTNNINNTNTSSSSNPICYFMDEHTTTTTNNNNDNGCCNANSSSCELKAKIMGHPHYHRLLAAYVNCRKVGAPPDVVARLEGACASALTMSGTSCTGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLHRIECQFKALSISSSDAGYHLDVCVNCDVELQESICLNCNRTDQWVNNHGVLIYDNMYVRVHLMADILYAYHPVCGEAFERNGSSEEEVDINGHSIDPQAEDRELKGQLLRKYSGCLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDGGHPQYYMDTVLGNPFPLDISPTLL 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1472443 1475236 - Carg07859-RA Car07g00281 151515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00281 416 Pfam ELK domain 298 319 IPR005539 GO:0003677
Car07g00281 416 Pfam KNOX2 domain 158 204 IPR005541 GO:0003677|GO:0005634
Car07g00281 416 ProSiteProfiles ELK domain profile. 298 318 IPR005539 GO:0003677
Car07g00281 416 Pfam KNOX1 domain 107 145 IPR005540 GO:0003677|GO:0005634
Car07g00281 416 ProSiteProfiles 'Homeobox' domain profile. 318 381 IPR001356 GO:0003677
Car07g00281 416 Pfam Homeobox KN domain 338 377 IPR008422 GO:0003677|GO:0006355
Car07g00281 416 ProSitePatterns 'Homeobox' domain signature. 356 379 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00281 Car-Chr7:1472443 Car09g00271 Car-Chr9:1479832 8.05E-75 dispersed
Car11g01493 Car-Chr11:12047728 Car07g00281 Car-Chr7:1472443 1.17E-103 wgd
Car03g00507 Car-Chr3:5161523 Car07g00281 Car-Chr7:1472443 1.07E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3814 PF03791 KNOX2 5.30E-20 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00281 - - cmax:111497440 502.671