Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00301 ATGCAAGCAGCTCCGAATCGTCAGTCTTCATCTGTGATCCATGAGATGTATCACCAGTCTGTGCAAGGGATGGATTCTTTCTATTTATCTCATTTCCACGTCTTGGAAAACAATGGCTCTCCCGATGCAAGCAGTCAGGGAAACAGTGTTATTTCTTCTTCCTATAAGGATCAGTTCTTCACTCTCGAATCGTTCCCGGCTACTGCTTATCTGAGCGCCTGTAATTCCCCTTCTGCTGTTAGTGTTCTGTCTTCCAGGAGCCCCTTCTCACCTCAAGGGTCTCAAACTTGCTCTTCTGATCAACATCATTCCTTTGACAACACATGTGGATCGCCGCAAAGTGGATGCTCGGTAACTGATGATGATTATGAATTGAAGCACAAGCTGAAGGAATTAGAGATTTCTTTGTTGGGACCAGAAACTGATATTGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGGGAGAGCCGAGATGCTTCGATGGCAAGGTGGAACTGGAATCAAATGATCGAAACAATTCCTAAACTAAGTCTTCGGGACACACTTATCCGGTGTGCTCAAGCAATTCATGAGGCTGATTTAAATGCGGCAACATCGTTTATGGATGTTTTGGGGCAAATGGTTTCGGTCTCTGGTGATCCAGCCCAGAGGTTGGGAGCTTACTTGTTGGAAGGGCTTAGAGCGAGGTTGGAGCGATCTGGAAGTGCAATATACAAGGCCTTAAAGTGCGAAGAGCCGTCAAGCTCTGAACTTATGTCCTATATGTCTATTCTATTCCAGATATGCCCGTACTTCAAATTTGCTTACACATCTGCAAATGCTTTCATTTGGGAGGCTATGGTAAATGAACCCGTAATCCACATCATTGATTTTCAAATTGCACAGGGTAGTCAGTATATACCTCTCATTGAGGATCTTGCCAGTCGGCCTGGTGGACCCCCAGTTCTTCTTCGCATTACGGGTGTGGATGATTCCCAATCAGCTCATGCTCGGGGAGGGGGACTTCAAATTGTGGGACAGAAGCTAGCTCAACTGGCTCAGTCTAAAGGAATTCCCTTCCAATTTCATGCTGCTGCAATGTCTGGTTGCAAGGTCGAGCGCAGTGATCTTAGAATACGACCTGGAGAAGCCTTGGCTGTAAATTTTCCATATGCCTTGCACCACATGCCAGATGAGAGCGTGAGCACACAGAACCATCGAGATCGTCTTCTAAGGCTGGTTAAGAGTCTATCACCAAAGGTAGTAACTATTGTTGAGCAGGAATCCAACACCAACACATCCCCGTTCTTTTTACGTTTTATAGAGACGCTGGACTATTATACTGCTATGTTCGAGTCAATAGACGTAGCTCGTTCAAGAGACGACAAGCAACGAATCAGGGCAGAGCAGCACTGTGTTGCCCGAGACATAGTGAACATGGTAGCATCCGCCACAGCTTCTCTTCTTCGTATCGCCGTCTTCCCTTCGAATGTCCCATCTGAAACCTCCTTTGTTCTGTTTCATCGAAATGCTGGAATGCGCCTCTGTGGTCGGCCTTCTTCTTCCGGCGTCATTCATCTGTTCACCAAGTCGATTGTAGCCGGCGCAACCGCGACCATTCGTCGTCGGCATAAATCTGAATACGCCAACGACAGGTCTCAGGTGAAGCCACATCAGAAAGATTCCTCCTCCTGGGATAGAACCTTTAGGAGCCTATGTATAACGGGGAGATTGAGCGAGGCGGTTGCACTTTTGTGCTGTATGCCCTTCCGATTTCACTCCAAAACTTACTGCCTTCTGTTACAAGAATGCATTTTCAGGAAAGAGTATATGAAAGGAAAAAGAATCCATGCTCAAATGGTTGTTGTTGGACATTTACCCAATGAGTATCTCAAAACCAAACTGCTGATATTATATGCCAAATTAGGTGACTTAGAAACTGCAAATGTTCTTCATGAGAAATTGCTGGAGAACAGTCTGGTTTCATGGAATGCATTGATTGCTGGATATGTACAGAAAGGGTTTGGAGAAGTTGGATTGGAGCTTTACTTTAAGATGAGACGAACTGGTTTAATACCTGATCAATATACCTTTGCATCAGTTTTCAGAGCCTGTGCTAGCTTAGCTTCTTTGGAACATGGAAAGAGAGCTCATGGAGTTCTGATTAAGTGTCGAATCGGCGACAATGTTGTCGTGTCTAGTGCCCTTGTTGATATGTACTTCAAATGCAGTAGCATATCAGATGGTCATAAGGTATTTAACAAATCTACAACTAGAAATGTGATTACATGGACTGCTTTAATATCAGGGTATGGCCACCATGGAAGAGTTTCTGAAGTTTTGGAATCCTTCAATAGGATGATAAATGAAGGTTACCGACCAAATTACGTTACATTCCTTGCGGTTCTTACTGCTTGTGGTCATGTTGGTTTTGTATCGGAAGCATGGCGATACTTATCGTTAATGAAGACGACGTATGAAATAGAACCAAGAGGGCAACATTATGCTGCCATGGCGGATCTTCTCGCGCGGGCAGGGAGGTTGCAAGAGGCATATAATTTTGTCGTCGATGCACCATGCAAGGAGCACGCTGTTATATGGGGTGCTTTGGTCGGGGGTTGTAAGGTTCACGAAGACATAGATTTGATGAAACATGCAGCAGCAAATTACTTGGCATTGGATGCTGGCAACGCTGGGAAGTATGTGGTTTTAGCAAATGGGTTTGCGGCGTCTGGCTTGTGGGATAATGTTGCGGAGATTAGAGGCATGATGAAGAAATCAGGAATGAATAAGGAACCTGGTTACAGCAGAATTGAGATACAACGTGAGTTTCACTTCTTTGTTAAAAGTGATAAATCTCACGAACAAGCCGAGGAGATTTATAGAACCATTCACAGCATCACTCCGATTTTAAAGGATGCAGGCTCTATTCATGAACTAAGTGAAAACTCATTGTAG 2937 44.67 MQAAPNRQSSSVIHEMYHQSVQGMDSFYLSHFHVLENNGSPDASSQGNSVISSSYKDQFFTLESFPATAYLSACNSPSAVSVLSSRSPFSPQGSQTCSSDQHHSFDNTCGSPQSGCSVTDDDYELKHKLKELEISLLGPETDIVDSCYCSFRGGESRDASMARWNWNQMIETIPKLSLRDTLIRCAQAIHEADLNAATSFMDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPSSSELMSYMSILFQICPYFKFAYTSANAFIWEAMVNEPVIHIIDFQIAQGSQYIPLIEDLASRPGGPPVLLRITGVDDSQSAHARGGGLQIVGQKLAQLAQSKGIPFQFHAAAMSGCKVERSDLRIRPGEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFFLRFIETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVASATASLLRIAVFPSNVPSETSFVLFHRNAGMRLCGRPSSSGVIHLFTKSIVAGATATIRRRHKSEYANDRSQVKPHQKDSSSWDRTFRSLCITGRLSEAVALLCCMPFRFHSKTYCLLLQECIFRKEYMKGKRIHAQMVVVGHLPNEYLKTKLLILYAKLGDLETANVLHEKLLENSLVSWNALIAGYVQKGFGEVGLELYFKMRRTGLIPDQYTFASVFRACASLASLEHGKRAHGVLIKCRIGDNVVVSSALVDMYFKCSSISDGHKVFNKSTTRNVITWTALISGYGHHGRVSEVLESFNRMINEGYRPNYVTFLAVLTACGHVGFVSEAWRYLSLMKTTYEIEPRGQHYAAMADLLARAGRLQEAYNFVVDAPCKEHAVIWGALVGGCKVHEDIDLMKHAAANYLALDAGNAGKYVVLANGFAASGLWDNVAEIRGMMKKSGMNKEPGYSRIEIQREFHFFVKSDKSHEQAEEIYRTIHSITPILKDAGSIHELSENSL 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1552894 1556666 - Carg07881-RA Car07g00301 151535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00301 978 ProSiteProfiles GRAS family profile. 169 559 IPR005202 -
Car07g00301 978 Pfam PPR repeat family 752 799 IPR002885 -
Car07g00301 978 Pfam PPR repeat family 653 699 IPR002885 -
Car07g00301 978 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 652 686 IPR002885 -
Car07g00301 978 Pfam GRAS domain family 178 479 IPR005202 -
Car07g00301 978 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 753 787 IPR002885 -
Car07g00301 978 Pfam E motif 870 932 IPR046848 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00301 Car-Chr7:1552894 Car20g00575 Car-Chr20:3226120 1.18E-164 dispersed
Car03g00543 Car-Chr3:5340762 Car07g00301 Car-Chr7:1552894 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3816 PF03514 GRAS 1.30E-96 CL0063 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00301 - - mcha:111005597 818.92