Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00322 ATGTTTCCAAGACTTGTGAATCCTGACGGAGATATCCAGATCCATGGCAGCCATGGTTCTGTTGCTTCCGACCTCACTCATCCCCACAGGGGTGATCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGACTCCGATGGACTGCCGATCTTCACGAGCGATTCGTCGATGCTGTTACTCAACTCGGTGGTGCTAACAAAGCTACACCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCCTCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTATCAGTAATTTCTCTCCTGACTTGCCAATTTCTGAAATGACCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAGTTACATCTGCAAGTTGAGGCAGAGAAGCATCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCGATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGTGCGGTATCGGACTCGGACAGCAAGAAGTCTCAAGGACTAGATCGTAAGAGCCCGAGAAGTTCCTCGATCGACCCTCTTGGTTTCTATGCTTCGCAATCACAGGGGATGGAAAGAGCGAATGGCACAGAAGAATTGCAAGGTAATCCTCCTTACCAAAGGGCTGATTGTTCGACCGAAAGCTGCCTAACCTCGAACGAAAGTCCTGGGGGATTGACTATGGAGAAATCTCCTGTGGCAAGCAAGAAAAACATAGTTAACTTGGATTCAGCAAATGCATCTTTGATTGGGATGAAGCTAGGGAAGGAATACAAGATGCTAATATCATCCAAATTAACCATCACGGCGTATCCGAGTGCGACATGTGGGGATGAAATTCTACAAACAAAAACTCATCATGATCCATGA 975 45.33 MFPRLVNPDGDIQIHGSHGSVASDLTHPHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGANKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSISNFSPDLPISEMTDGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGLDRKSPRSSSIDPLGFYASQSQGMERANGTEELQGNPPYQRADCSTESCLTSNESPGGLTMEKSPVASKKNIVNLDSANASLIGMKLGKEYKMLISSKLTITAYPSATCGDEILQTKTHHDP 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1626700 1629996 + Carg07902-RA Car07g00322 151556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00322 324 MobiDBLite consensus disorder prediction 191 217 - -
Car07g00322 324 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Car07g00322 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Car07g00322 324 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Car07g00322 324 MobiDBLite consensus disorder prediction 231 265 - -
Car07g00322 324 MobiDBLite consensus disorder prediction 1 29 - -
Car07g00322 324 MobiDBLite consensus disorder prediction 231 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00322 - - - csv:105435941 510.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00322 Car-Chr7:1626700 Car14g01696 Car-Chr14:13483448 4.12E-64 dispersed
Car03g00568 Car-Chr3:5454291 Car07g00322 Car-Chr7:1626700 2.34E-26 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g01696 CST 12 271 G2-like Transcription Factor Family AT3G24120 60.1 1.2e-73 273.9
Car10g01051 . 16 203 G2-like Transcription Factor Family AT3G24120 53.0 9.5e-42 167.9
Car19g00887 . 18 178 G2-like Transcription Factor Family AT3G24120 58.5 8.1e-41 164.9
Car06g01068 CST 12 101 G2-like Transcription Factor Family AT3G24120 87.0 1.1e-40 164.5
Car19g00157 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.1e-37 154.5
Car07g00322 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Car20g00562 . 92 236 G2-like Transcription Factor Family AT5G44190 66.2 6.8e-47 185.3
Car01g00304 . 189 413 G2-like Transcription Factor Family AT5G16560 50.4 2.3e-43 173.7
Car19g00172 . 150 352 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Car12g00477 CCT 4 143 G2-like Transcription Factor Family AT5G42630 58.3 8.2e-38 154.5
Car04g02002 . 40 278 G2-like Transcription Factor Family AT1G25550 52.0 6.6e-45 178.3
Car04g02002 . 40 278 G2-like Transcription Factor Family AT3G25790 51.6 1.5e-38 157.1
Car03g00998 . 1 305 G2-like Transcription Factor Family AT5G05090 54.1 3.8e-74 275.4
Car07g01077 . 1 299 G2-like Transcription Factor Family AT5G05090 54.5 1.2e-72 270.4
Car14g00453 . 1 279 G2-like Transcription Factor Family AT5G05090 58.2 1.1e-70 263.8
Car06g00019 . 1 286 G2-like Transcription Factor Family AT5G05090 52.3 2.4e-68 256.1
Car14g01696 CST 12 315 G2-like Transcription Factor Family AT4G13640 57.3 2.4e-61 233.0
Car14g01696 CST 12 271 G2-like Transcription Factor Family AT3G24120 60.1 1.2e-73 273.9
Car10g01051 . 16 203 G2-like Transcription Factor Family AT3G24120 53.0 9.5e-42 167.9
Car19g00887 . 18 178 G2-like Transcription Factor Family AT3G24120 58.5 8.1e-41 164.9
Car06g01068 CST 12 101 G2-like Transcription Factor Family AT3G24120 87.0 1.1e-40 164.5
Car19g00157 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.1e-37 154.5
Car07g00322 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Car06g01472 . 47 278 G2-like Transcription Factor Family AT1G69580 50.4 2.7e-40 163.3
Car19g00887 . 1 387 G2-like Transcription Factor Family AT1G79430 51.7 3.0e-82 302.8
Car10g01051 . 1 352 G2-like Transcription Factor Family AT1G79430 54.6 2.1e-80 296.6
Car02g00488 . 1 209 G2-like Transcription Factor Family AT1G79430 63.0 1.5e-54 210.7
Car07g00323 . 66 274 G2-like Transcription Factor Family AT2G01060 66.7 8.6e-54 207.6
Car07g01077 . 1 299 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-89 326.2
Car03g00998 . 1 305 G2-like Transcription Factor Family AT3G10760 60.1 1.7e-87 320.1
Car06g00019 . 1 286 G2-like Transcription Factor Family AT3G10760 58.1 3.9e-84 308.9
Car14g00453 . 1 279 G2-like Transcription Factor Family AT3G10760 58.6 7.6e-80 294.7
Car07g01077 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 6.5e-60 228.0
Car14g00453 . 1 195 G2-like Transcription Factor Family AT2G40970 59.9 4.2e-59 225.3
Car03g00998 . 1 204 G2-like Transcription Factor Family AT2G40970 59.0 5.5e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007112 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3818 PF00249 Myb_DNA-binding 4.30E-06 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00322 Car_Chr07 FPKM 12.462662 13.603636 0.727058 0.599478 1.381688 1.252861 1.203991 0.328703 0.33193 0.319583