Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00337 ATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGTCGGATTTCAACCATATGGCTATGGGAGTTTTCCTCCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGGCTTCCCTTCAACTGCTCTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTGCTGGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTCGCTGGCTCTGTGCAAGTTGAGTTCGCATTGCAACGGGATCGACAAAATATGGGGCGTAGGTACGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCTATTGCTGCTGAAGTAAACTATGAGGGCATTTATGATAACGACTACCATGGAAGTCCTCCTCCTCGACAAAAGAGGTTCAGCGACAAGGACCAGATGGAATACACCGAGATACTGAAGCTGCGTGGTCTGCCTTTCTCTGTGAAAAAATCCGACATTATTGAGTTTTTTGGAGAGTTTGACCTCGCTGAAGATAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGTGAGGCTTACGTTGAGTTTGCTTCAGAAGAGGAGGCAAAGAGAGCAATGAGTAAGGACAAGATGACAATTGGGTCGAGATATGTGGAGTTGTTTCCTTCAACCTCAAATGAGGCTAGAAGAGCTGAGTCAAGGTCAAGACAGTGA 771 47.08 MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELFPSTSNEARRAESRSRQ 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1691214 1691984 + Carg07917-RA Car07g00337 151571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00337 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 244 IPR000504 GO:0003723
Car07g00337 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 237 IPR000504 GO:0003723
Car07g00337 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 116 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00337 K12898 HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H - csv:101213884 487.263
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00578 Car07g00337 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01041 Car-Chr2:7261978 Car07g00337 Car-Chr7:1691214 7.88E-82 dispersed
Car07g00337 Car-Chr7:1691214 Car20g00069 Car-Chr20:371640 5.13E-82 dispersed
Car03g00578 Car-Chr3:5509421 Car07g00337 Car-Chr7:1691214 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1192 . . . . . . . Bma15g00888 . . Cma03g00623 Cma07g00385 Car03g00578 Car07g00337 . Cpe19g00897 Cpe10g00714 . . . . . . . . . . . . . . . Cone12ag0866 . . Lsi01g00530 . . . . Blo06g00274 . . Bpe10g00194 . . . . . Cmo07g00378 . . . . . . . . . . . . . . . . . . . . . . Chy02g00506 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005883 2 2 1 1 2 1 2 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00337 Car_Chr07 FPKM 103.054207 114.841766 9.200687 8.524931 10.781816 9.779657 9.558342 0.171498 0.158493 0.0