Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00374 ATGGTTTTCATCTCACTTGTTTTCACACTTCATCCTCCCGTTTGGGCATTCCTCAGGTTAAGAACAGATGAGGAAGTAAAAGATCCTGTAGCAGTGAGAAAAATTCAGAAGGCAGATCGTGAAAAATTGAGGAGAGACAGGCTGAATGAACATTTTCTTGAGCTCGGAAACACATTAGATCCAGATAGGCCCAAAAATGACAAGGCTACCATCCTTACAGACACTATTCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAAGCTGACTATGAAGCTCTTTCTGAAGAATCACGCGAGTTAACACAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGACATCGAAAATCTAAATGCACAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCTACCATGGATCCTTCGGTGGTAATGGGGCCCCCATATTCATACCCAGTTCCTGTTCCCGTTCCCCCTGGACCAATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAGTCAGAATCCGGGTGCTATTCCTAACCCCTGTTCTACATTTGTCCCGTATACTGCTGCTGCCAATCATCCGATTGAACAGCCCTCTGCCCAATATGCTTCCAATTCACACATCTCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCATCCTAAGCGTAGCAACGTGGAAAGGTGCGACGAATCTAATGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCAACACAACAGGATGCATCCTCTGCAAGTAAGAAAGGTAAGCAGTCACAGAGGAAAGAAAAAAGTGTTACAGATCGTAGTTCTTCAAGTAGATTTTCTTCGTCCCAAGTTCTACAAGATAGCTCCTCTAACAGCGTTGGCGACATTCCGAAACAGAACAACTGA 927 43.58 MVFISLVFTLHPPVWAFLRLRTDEEVKDPVAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGSQNPGAIPNPCSTFVPYTAAANHPIEQPSAQYASNSHISSKQDSRSKSSDHPKRSNVERCDESNDVATDLELKMPGSSTQQDASSASKKGKQSQRKEKSVTDRSSSSRFSSSQVLQDSSSNSVGDIPKQNN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1868212 1872290 + Carg07954-RA Car07g00374 151608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00374 308 MobiDBLite consensus disorder prediction 281 308 - -
Car07g00374 308 Coils Coil 72 127 - -
Car07g00374 308 MobiDBLite consensus disorder prediction 207 308 - -
Car07g00374 308 Pfam Helix-loop-helix DNA-binding domain 33 82 IPR011598 GO:0046983
Car07g00374 308 MobiDBLite consensus disorder prediction 266 280 - -
Car07g00374 308 MobiDBLite consensus disorder prediction 220 245 - -
Car07g00374 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 82 IPR011598 GO:0046983
Car07g00374 308 MobiDBLite consensus disorder prediction 250 265 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g00631 Car07g00374 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00374 Car-Chr7:1868212 Car11g00145 Car-Chr11:823608 1.99E-22 dispersed
Car03g00631 Car-Chr3:5736414 Car07g00374 Car-Chr7:1868212 2.39E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3820 PF00010 HLH 5.70E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00374 - - csv:101222613 481.1