Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g00399 | ATGTCAATGTCTGGTTTCTTCACTCTAGGCTCCACCGACCAAGAACACCAACAACCCGACACGAATCGCCCAAACCAAACACTCCCCCCGGACACCTTGTTTTGGTACAAGCCCGGAAGCGTCGAGCTATGGCAGCCCCAACAGCACCAACAGCACCAACAACAATCGCTATTTCAAACGCGGTCTCACAACAACAACAACAATCTGTACTCGGGTGAATCCTCGTCCAGATCCGGTAATTTAATGATGATTAGCTCCGGATCAGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCCAAAAAAGACTGTACCCATATGCGATGCAGGAGTTGCTGCAACACCCGAGGCTTCCCTTGCCAGACCCATGTCAAAAGCACTTGGGTCCCTGCTGCCAAGCGCCGTCAGCGCCAACAAAAACTCGCCGCCTTACAAACCCATCCCAAACGCCACACAGATTATAACATCCCCACCACCAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAATTGAACTCCCCGGCTGTATTCCGTTGCGTTCGTCTCAGCTCCACCGACGACACCGACGATCAATACGCATATCAAACGGCAGTGAACATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATCTTCCCGGTGAGACCTCCTCCGGCGGCGGTGGTGGGTTGCAACCACTGAATTTCATCGCCGGTGCCGCCGATGCCAACGCTGCTTCCTCCGCCGCATTACCCTTACTCGATCCCTCTTCGTTATACTCAGCGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCCTAA | 852 | 52.93 | MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQTRSHNNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2030316 | 2031253 | + | Carg16076-RA | Car07g00399 | 151633 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g00399 | 283 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Car07g00399 | 283 | Pfam | Domain of unknown function (DUF702) | 92 | 219 | - | - | |
| Car07g00399 | 283 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car03g00648 | Car07g00399 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00714 | Car-Chr4:4129188 | Car07g00399 | Car-Chr7:2030316 | 3.20E-69 | dispersed | |
| Car07g00399 | Car-Chr7:2030316 | Car16g00675 | Car-Chr16:4281795 | 8.04E-72 | dispersed | |
| Car01g01515 | Car-Chr1:12816384 | Car07g00399 | Car-Chr7:2030316 | 1.96E-58 | wgd | |
| Car12g00407 | Car-Chr12:2598434 | Car07g00399 | Car-Chr7:2030316 | 5.96E-68 | wgd | |
| Car03g00648 | Car-Chr3:5844979 | Car07g00399 | Car-Chr7:2030316 | 8.27E-57 | wgd | |
| Car05g00232 | Car-Chr5:1231740 | Car07g00399 | Car-Chr7:2030316 | 3.93E-72 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3826 | PF05142 | DUF702 | 5.20E-54 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g00399 | - | - | cmax:111497365 | 493.041 |