Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00403 ATGGCAGCCGCAGCAGAGGGACGAGTCATTCGCTGTAACACCATTGATTCATGGAACCAACAAATTCAGAAGGGCAATGCCTCTGAGGAGCTGATAGTTGTGGATTTCTCTGCATCATGGTGCGGTCCATGTCGGTTCATTGAACCTTTTCTAAACCAGCTTGCTCAAAAATTTCCCACTGTCACATTTCTAAAGGTTGATGTGGATGATCTTGAGTCTGTAGCTAAGGATTGGGGGGTGGAGGCAATGCCTACTTTCATGTTCCTGAAAGAGGGAAGAATTGTGGACAAAGTGGTTGGAGCTAAGAAGGAAGAACTGCAGCAGACTGTATTCAAGCATATGTCTGCTACTGTTTCTGCTTGA 363 45.73 MAAAAEGRVIRCNTIDSWNQQIQKGNASEELIVVDFSASWCGPCRFIEPFLNQLAQKFPTVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMSATVSA 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2044337 2045331 + Carg16073-RA Car07g00403 151637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00403 120 Pfam Thioredoxin 14 110 IPR013766 -
Car07g00403 120 ProSitePatterns Thioredoxin family active site. 33 51 IPR017937 -
Car07g00403 120 ProSiteProfiles Thioredoxin domain profile. 1 115 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00403 K03671 trxA; thioredoxin 1 - csv:101203181 194.126
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00652 Car07g00403 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00403 Car-Chr7:2044337 Car14g00550 Car-Chr14:3014683 2.05E-37 dispersed
Car12g00365 Car-Chr12:2339847 Car07g00403 Car-Chr7:2044337 4.62E-13 dispersed
Car12g00416 Car-Chr12:2652475 Car07g00403 Car-Chr7:2044337 6.19E-33 dispersed
Car01g01512 Car-Chr1:12800636 Car07g00403 Car-Chr7:2044337 1.79E-44 wgd
Car12g00415 Car-Chr12:2649762 Car07g00403 Car-Chr7:2044337 1.16E-29 wgd
Car03g00652 Car-Chr3:5862279 Car07g00403 Car-Chr7:2044337 1.84E-79 wgd
Car05g00225 Car-Chr5:1177976 Car07g00403 Car-Chr7:2044337 4.60E-32 wgd
Car07g00403 Car-Chr7:2044337 Car09g00116 Car-Chr9:564670 2.46E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00403 Car_Chr07 FPKM 31.925121 35.543854 38.69519 37.488667 13.909238 15.193093 14.11653 20.396523 20.534195 21.04048