Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00424 ATGTCCTTCAAAAGCTTTTTTCGCGAGCTATGGGAAATCAAAGACAGACTCGCAATCAAACCGAAGCGAGGGGGAGAAGGAAGGAACTGGCGAAGTCGAACCAGGTCACATATTGCACCTGATGAAGTGCTTCCTCAGCCTGAAGCAGTTCAGCAAGGCCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATCCGAAGAGTAGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGCTGTCCTGTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACGAAGGAAGTTGTCAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCACTGAAACAGGTAAAGGGCTTACTTTCATTGATCTCTTTTGATAAGTTTATGCTTCAACTTACACTTGCCATTGTTGCTCTTGCGAAGCCGGGACCTCGAGACTCTCCAATTCAATGCTATGTTAGAAGGCACCGAGCAACTTCGACCTATCGTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAAGTGATAAACTGTTATTAGCAGCTAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCACTGGTTGCTGATGATTTTTCCTGGATCCGCAGTACCTATGTAGGCAAATTAAGGCAAGCGTCCAACTTCTTTGGCACAAAGTTCACCATGTATGATACTCAACAGAATAATCAATCAACCCGTTCAATTCATGCTAATAAGCAAGTCTCTCCAAGAATGTCAGCTTGTAACTACACTATAGGGGCAATCTCTTATGAGCTTAATGTTCTACGCACTAGAGGGCCCAGAAGAATGCACTGTGCCATACACTCAATCCCTGTATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACATCATTCACGGCCTGTGTCGATAACCAATGCTCTCCTCTACCAGCTTCTAAAGGAAAGGAGCCAGAGACAGATGCAAGTTCCACATGCATCGAAGGTGCACAGGTTCAAGATTTGGGAGAATCCTTGGTTCTTAAGAACAAGGCTCCTAGATGGCACGAACAGCTTCGATGCTGGTGCTTGAACTTCAGAGGACGTGTGACAGTGGCTTCTGTAAAAAACTTTCAACTCGTGGTCGATGTAGATCCCGCCCTCAACGTGTCGGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAAAGGACATCTTCACAATGGATTATCGCTACCCGCTCTCCGCCTTCCAAGCCTTCGCAATCTGCTTGAGTAGCTTCGACACCAAACCAGCATGTGAATAA 1302 45.78 MSFKSFFRELWEIKDRLAIKPKRGGEGRNWRSRTRSHIAPDEVLPQPEAVQQGQWANLPPELLLDIIRRVEESETSWPARTAVLFCASVCKSWRNITKEVVKTPEQCGRLTFPISLKQVKGLLSLISFDKFMLQLTLAIVALAKPGPRDSPIQCYVRRHRATSTYRLYSGLVPSENESDKLLLAAKRVRRATGTDFVISLVADDFSWIRSTYVGKLRQASNFFGTKFTMYDTQQNNQSTRSIHANKQVSPRMSACNYTIGAISYELNVLRTRGPRRMHCAIHSIPVSCIQQGGNAPTPTSFTACVDNQCSPLPASKGKEPETDASSTCIEGAQVQDLGESLVLKNKAPRWHEQLRCWCLNFRGRVTVASVKNFQLVVDVDPALNVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2158858 2160932 + Carg16051-RA Car07g00424 151658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00424 433 ProSitePatterns Tub family signature 1. 361 374 IPR018066 -
Car07g00424 433 ProSitePatterns Tub family signature 2. 418 433 IPR018066 -
Car07g00424 433 Pfam F-box domain 55 101 IPR001810 GO:0005515
Car07g00424 433 Pfam Tub family 142 428 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00424 Car-Chr7:2158858 Car16g00653 Car-Chr16:4150748 0 dispersed
Car08g00491 Car-Chr8:3119586 Car07g00424 Car-Chr7:2158858 4.48E-14 dispersed
Car17g00282 Car-Chr17:1737428 Car07g00424 Car-Chr7:2158858 2.76E-27 dispersed
Car01g01497 Car-Chr1:12703505 Car07g00424 Car-Chr7:2158858 2.32E-161 wgd
Car04g00698 Car-Chr4:4053007 Car07g00424 Car-Chr7:2158858 0 wgd
Car07g00424 Car-Chr7:2158858 Car09g00133 Car-Chr9:637201 2.45E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3827 PF01167 Tub 5.00E-97 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00424 K19600 - csv:101221704 671.774