Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00442 ATGGCGGATTCTCTGAGCGCTTTGAGGCTTCTAATGGCGTCACATGCTCCTCCTCTTGACGCCTTGGTTGTTCCTTCTGAGGATTATCATCAGAGTGAATATGTATCTGCGAGAGACGAACGACGTGCATTTGTTTCTGGTTTCACCGGAAGTGCTGGTCTGGCACTTATAACCCAGAGAGAAGCATTACTGTGGACCGATGGGCGTTATTTTCTGCAGGCAATTCAACAACTCAGCGATCAGTGGAAGCTTATGCGAATTGGAGAGGATCCTCCCGTAGATCTCTGGATGGCAGAGAATCTTCCAGCGGATGCAGCTGTTGGAGTGGATCCTTGGTGTGTGTCAGTAGACACTGCACAAAAGTGGATTCACGCATTTGCTAAAAAGCAGCAGAAGCTGGTTCAAACTACCACCAACTTAGTTGATGAAGTTTGGAAGAATCGACCACCACCAGAAATAAATCCTGTTATCATACACCCGCTGGAATATACTGGCTGCTCTGTTGAAGATAAGTTGAAGACTTTGAGAGCAAAACTTTCACAAGAGAAAGCTCATGGTTTAATTGTGACTGGTCTTGATGAAGTTGCTTGGTTATACAATATCCGTGGGAGTGATGTTTCATACTGTCCAGTTGTACATGCATTTGCAATAGTGACACTCAACTCAGCGTTTTTTTACGTGGACAAGAGGAAGGTGTCTGATGAGGTACGCTTGTACCTGGAGAAAAATGGAATTGAAGTTCGGGATTATAGTGCAGTAATAGTAGATGTATCTTCACTTACATCTAATCAACAAAACTTGTCATCTTTTGTAAAAGGACCTGAAGTTAGCGCTACTGTAGGGGAACTTAGTTCGATTGACATAACAGGGTCTAATGGAACTAAAGTGGAAAGCCAGAGTCCTGGCCTTGTATGGGTTGATCCTGCTCAATGCTGCTATGCTTTGTATTCTAAACTGAACTCTGATAAGGTTCTCCTGCAACAGTCGCCATTGGCCCTTGCAAAAGCTCTAAAGAACTCTGTTGAGTTGGATGGACTAAAGAATGCACACATTCGGGATGGTGCAGCTGTTGTACAATATCTTGTGTGGCTGGATAAGCAGCTGCAAGAGACTTATGGGGCTTCTGGGTACTTTTTGGAAGGGGATGGAGCGAGGAAGCCCAAACCATCGGACTCGAAGAAACTGACAGAAGTTACAGTAAGTGATAAGCTCGAGGCTTTCCGTGCATCAAAGGAGCATTTCAGAGGCTTAAGTTTCCCTACGATTTCATCTGTTGGTTCAAATGCTGCAATTATACATTATGGACCACAAGCAGAGACATGCGCGGAGTTGGATCCTGAAAGCATCTATCTTTTTGACTCAGGGGCTCAGTATTTGGATGGAACAACTGATATCACGCGGACAGTCCATTTTGGATTACCATCAGCACATGAGAAAGCTTGTTATACGGCAGTTCTCAAAGGCCATATTGCTTTGGGAAATGCAAGATTTCCAAATGGCACAAATGGCCATGCGTTGGATATTCTTGCTCGAGTTCCTTTGTGGAAGGATGGTCTGGATTATCGACATGGCACTGGCCATGGAATTGGTTCTTTCCTTAATGTTCATGAAGGACCCCATTTGATTAGTTTCAGACCCCAGGCTCGAAATGTTCCACTTCAAGCTTCAATGACTGTAACGGATGAGCCTGGCTATTATGAGGATGGCGCCTTCGGTATTAGGTTGGAGAACGTACTTATCGTGAAGGACGCCGACACAAAATTTAATTTTGGTAATAAAGGCTACTTATCGTTCGAGCACATAACATGGGCACCATACCAGAAAAAGTTGATCCACACAAGTCTTCTCACAGCTGAAGAATTGAATTGGGTGAACACTTATCATTCAAAATGTAGGGACATTCTTGCTCCATATTTGGATGAATCTGAGAAGACATGGCTGGAGAAGGCCACCGAGCCAATAACTGCCTGA 1971 44.29 MADSLSALRLLMASHAPPLDALVVPSEDYHQSEYVSARDERRAFVSGFTGSAGLALITQREALLWTDGRYFLQAIQQLSDQWKLMRIGEDPPVDLWMAENLPADAAVGVDPWCVSVDTAQKWIHAFAKKQQKLVQTTTNLVDEVWKNRPPPEINPVIIHPLEYTGCSVEDKLKTLRAKLSQEKAHGLIVTGLDEVAWLYNIRGSDVSYCPVVHAFAIVTLNSAFFYVDKRKVSDEVRLYLEKNGIEVRDYSAVIVDVSSLTSNQQNLSSFVKGPEVSATVGELSSIDITGSNGTKVESQSPGLVWVDPAQCCYALYSKLNSDKVLLQQSPLALAKALKNSVELDGLKNAHIRDGAAVVQYLVWLDKQLQETYGASGYFLEGDGARKPKPSDSKKLTEVTVSDKLEAFRASKEHFRGLSFPTISSVGSNAAIIHYGPQAETCAELDPESIYLFDSGAQYLDGTTDITRTVHFGLPSAHEKACYTAVLKGHIALGNARFPNGTNGHALDILARVPLWKDGLDYRHGTGHGIGSFLNVHEGPHLISFRPQARNVPLQASMTVTDEPGYYEDGAFGIRLENVLIVKDADTKFNFGNKGYLSFEHITWAPYQKKLIHTSLLTAEELNWVNTYHSKCRDILAPYLDESEKTWLEKATEPITA 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2241852 2249123 + Carg16033-RA Car07g00442 151676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00442 656 Pfam C-terminal region of peptidase_M24 595 654 IPR032416 -
Car07g00442 656 ProSitePatterns Aminopeptidase P and proline dipeptidase signature. 523 535 IPR001131 -
Car07g00442 656 Pfam Creatinase/Prolidase N-terminal domain 147 342 - -
Car07g00442 656 Pfam Metallopeptidase family M24 394 582 IPR000994 -
Car07g00442 656 Pfam Creatinase/Prolidase N-terminal domain 6 142 IPR000587 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00442 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] - csv:101216415 1219.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00702 Car07g00442 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01040 Car-Chr12:10261096 Car07g00442 Car-Chr7:2241852 0 transposed
Car03g00702 Car-Chr3:6126014 Car07g00442 Car-Chr7:2241852 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g924 . Blo16g00036 . . . Bpe13g00455 . . . . Cma03g00772 Cma07g00505 Car03g00702 Car07g00442 Sed14g1097 Cpe19g00796 Cpe10g00592 Bhi03g01267 Tan03g1954 Cmetu05g1256 . Hepe04g1486 . . Cla01g01884 Cam01g1975 Cec04g1627 Cco04g1691 Clacu01g1996 Cmu01g1866 Cre04g1547 . . . Cone9ag1530 Lsi01g00701 . . Cme08g00824 . . Bda11g01877 . . . . . . Cmo03g00802 Cmo07g00503 . . . . . . . . . . . . . . . . . . . . . Csa06g03215 Chy02g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007552 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00442 Car_Chr07 FPKM 13.55546 13.60377 9.619079 7.537843 3.142402 2.68909 3.086657 19.097918 22.74295 21.825962