Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00446 ATGGCTACTTCATTGCCTTTACCGGAACTTGTTTTCGTCTCGCCGAAGCGCCTTCTGTCTACTTCCAGTTCCAGATGTATGCACTATAGGATTCCTCTCTCTAGAAGCTGTAATTTTCGTGTTCTTTTTCGGACTAAGGTCAACGCTGTTAGAGAAGACGGAGTGATTGTTGACAAGAGAGAGAGCGAGTTGATCAAGGAAGCTAATGGTTATGAACTTGGTGGCAATGGAGCTGCTTACAAGGAGAATGGCGATTACAGGTATAATGGCTGGGTTAATGGTGGAGTTACGGTTGTGGAGAGTGAGACTGATAGTAGTAATGGGAGCTTAATGAAGTATGTTAATGGAAATGGTGTTGCTGCGTCGGTGGTGGGGGAAATTCAAGCTTCGGAGTCGACGGAGGAGGGGAGGAAGAAGAGGATAGAGGAGATTGGTAAAGAAGAGGCTTGGTTCAAGCGGAGTGAACAGCAACAGACCGAGGTTTCTGTGGCACCTGGTGGACGCTGGAATAGATTTAAAACATATTCAACAATTCAGAGAACCTTGGAGATATGGGGATTTGTTTTTACTTTTATCATTAAGGCTTGGCTTAACAGTCAGAAATTTACTTATCGAGGAGGAATGACAGAGGAGAAGCAGGTTTCCAGAAGAAAGATCCTTGCCAAATGGTTGAAAGAAAGCATTCTAAGATTAGGTCCAACGTTTATTAAAATTGGACAGCAGTTTTCCACAAGAGTGGACATTCTACCACAAGAATATGTTGACCAGTTATCAGAACTTCAGGATCAAGTTCCTCCGTTCCCATCTGAGACAGCAATATCAATAGTTGAAGAAGAGCTTGGAGGTCCTTTGGACAATATATTTGATTGGTTTGATCGTGAACCAATAGCAGCTGCTAGTCTTGGTCAGGTTCATCGTGCAAGATTGAAGGGGCAGGAGGTTGTGGTGAAAGTCCAAAGGCCAAGTCTAAAGGAACTCTTTGACATTGACCTTAAGAACCTAAGGGTCATAGCAGAATACCTTCAAAAATTTGATCCGAAGTCAGATGGTGCAAAGAGAGATTGGGTTGCTATATATGATGAGTGTGCTAACGTCCTGTATCAGGAAATAGATTACACCAAGGAAGCGGCTAATGCCGAGCAGTTTGCAAAAAACTTTAAAAACTTGAACTACGTGAAAGTCCCGTCAATATTCTGGGACTATACTACTCCACAGGTTCTGACTATGGAGTATGTCCCTGGAATCAAAATAAATAAGATTAAAGCTCTGGATCAACTAGGCATTGATCGAAAACGTCTAGGTCGTTATGCAGTTGAATCTTACCTGGAGCAAATTCTGTCTCATGGATTCTTCCACGCAGATCCTCATCCTGGAAATATTGCTGTCGATGATGTCAATGGAGGAAGGTTGATCTTTTATGATTTTGGAATGATGGGGAGTATCAGTTCAAATATCAGAGAGGGTTTGCTAGAAACGTTCTATGGAGTGTATGAGAAAGATCCGGACAAGGTTCTTCAAGCAATGATTCAAATGGGAGTTCTTGTGCCTACTGGAGACATGACTGCTGTTAGACGAACAGCTCAATTCTTCCTCAACAGTTTTGAAGAACGTTTGGCTGCACAGAGAAGGGAGAGAGAGATGGCAACCGCAGAACTTGGCTTTAAGAAACCATTGACCAAGGAGGAAAAGTTGATGAAGAAAAAGGAACGTCTAGCTGCAATTGGAGAAGATCTATTAGCCATTGCAGCAGACCAACCATTTCGGTTTCCTGCCACATTCACATTTGTTGTTAGAGCATTTTCAGTATTAGATGGCATTGGGAAAGGCCTCGACCCACGATTTGATATTACTGAAATTGCCAAACCGTGA 1869 42.7 MATSLPLPELVFVSPKRLLSTSSSRCMHYRIPLSRSCNFRVLFRTKVNAVREDGVIVDKRESELIKEANGYELGGNGAAYKENGDYRYNGWVNGGVTVVESETDSSNGSLMKYVNGNGVAASVVGEIQASESTEEGRKKRIEEIGKEEAWFKRSEQQQTEVSVAPGGRWNRFKTYSTIQRTLEIWGFVFTFIIKAWLNSQKFTYRGGMTEEKQVSRRKILAKWLKESILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAISIVEEELGGPLDNIFDWFDREPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKFDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANAEQFAKNFKNLNYVKVPSIFWDYTTPQVLTMEYVPGIKINKIKALDQLGIDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREMATAELGFKKPLTKEEKLMKKKERLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKP 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2269673 2276242 + Carg16029-RA Car07g00446 151680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00446 622 Coils Coil 531 551 - -
Car07g00446 622 Pfam ABC1 atypical kinase-like domain 259 507 IPR004147 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00446 - - - cmos:111463308 1182.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00768 Car07g00446 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01210 Car-Chr1:11148221 Car07g00446 Car-Chr7:2269673 9.65E-46 dispersed
Car07g00446 Car-Chr7:2269673 Car07g00637 Car-Chr7:3230388 8.07E-167 dispersed
Car09g00475 Car-Chr9:2652295 Car07g00446 Car-Chr7:2269673 6.71E-46 dispersed
Car13g00631 Car-Chr13:7958875 Car07g00446 Car-Chr7:2269673 1.29E-31 dispersed
Car01g00370 Car-Chr1:2076945 Car07g00446 Car-Chr7:2269673 1.05E-50 transposed
Car04g01929 Car-Chr4:11832090 Car07g00446 Car-Chr7:2269673 8.19E-24 transposed
Car04g02793 Car-Chr4:21384033 Car07g00446 Car-Chr7:2269673 1.29E-42 transposed
Car11g01019 Car-Chr11:7191359 Car07g00446 Car-Chr7:2269673 5.15E-12 transposed
Car20g00735 Car-Chr20:4309622 Car07g00446 Car-Chr7:2269673 1.02E-27 transposed
Car03g00706 Car-Chr3:6152679 Car07g00446 Car-Chr7:2269673 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g877 . . . . . Bpe13g00456 . Bma15g01028 . . . Cma07g00510 . Car07g00446 . . . . . . . . . . . . . . . . . . . . Cone3ag0624 . . . . . . . . . . . . . . Cmo07g00508 . . . Car05g00768 . . Bhi10g02053 Tan05g1355 . . Hepe10g1418 . . . . . . . . . . Csa04g00525 . Cme02g00859
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005789 3 1 2 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00446 Car_Chr07 FPKM 8.631778 10.127028 2.282615 2.705602 5.125802 4.69982 5.23721 5.639654 5.691812 4.843983