Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00505 ATACACAATAATTCCAATACGGAAAAAAGGAAAATGACCCTTCTCCTTTTGGATCTGCGACTTCAACACTTTCCTCCTCGTTCTTACGTGCTCGAACACCTATTCTTGTCCAAATATGGCAAAAATGTTGCTCTTCCTTCTCTGCAACTGCGATTGTTGAACGAATTCCCTCTTTTAGTATTTTCCAATTCTGGCTCGAATCATTCGATTGTTCACTGGTTAATTCAGATTAGAATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACCTTCTCTAAGCGCCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTATCCGTTTTATGCGACGCTGATGTCGCCCTCATTATCTTCTCCACCACCGGGAAGCTGTTTGAGTACTCCAGCTCAAGTATGAAGGGAATTATAGAAAGACATAACTTGCACTCTAAGAACCTCCAGAAATTGGAACAACCATCCCTTGAACTACAGCTCGTTGAAAACAGCAATTACACTCGATTAAACAAGGAAATTGCAGAGAAAACTCATCAGCTAAGGCAAATGAGGGGCGAAGAGCTGCAAACGTTGAATATTGATGAACTGCAGCAGCTAGAGAAGTCACTGGAGTTTGGATTGAGCCGTGTAATGGAGAAAAAGGGCGAAAAGATCATGAAGGAGATCACTGATCTTCAAAGAAAGTCGGCCGAGCTGGTGGAAGAGAATAAGCGACTGAAAAAACAAGCGGAGAAAATGGATGGTGTGAGGAACTTCGGCGTAGAGCCCGAGATTTTGGTAGTGGAAGATGGCCAGTCCTCGAACTCGGTCACTGAAGCTTGTGTCACCAACTCCAATGGCCCGGCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAGCTA 900 44.89 IHNNSNTEKRKMTLLLLDLRLQHFPPRSYVLEHLFLSKYGKNVALPSLQLRLLNEFPLLVFSNSGSNHSIVHWLIQIRMAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRKSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKL 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2547378 2551308 + Carg15969-RA Car07g00505 151739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00505 300 Coils Coil 172 192 - -
Car07g00505 300 MobiDBLite consensus disorder prediction 270 300 - -
Car07g00505 300 Coils Coil 228 251 - -
Car07g00505 300 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 88 135 IPR002100 GO:0003677|GO:0046983
Car07g00505 300 ProSiteProfiles K-box domain profile. 165 255 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g00505 300 Pfam K-box region 170 249 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g00505 300 ProSiteProfiles MADS-box domain profile. 79 139 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00505 Car-Chr7:2547378 Car19g00350 Car-Chr19:5391161 8.45E-62 dispersed
Car16g00245 Car-Chr16:1561553 Car07g00505 Car-Chr7:2547378 1.23E-38 dispersed
Car12g00179 Car-Chr12:1106121 Car07g00505 Car-Chr7:2547378 1.07E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3839 PF01486 K-box 2.10E-16 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00505 - - csv:101203152 396.356