Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00516 ATGGAGAAGAAAGACAGAAGAAGAAGCACACAGCCATGGATTTGGAAGCTTGAGCTCTCATCAATGGCGCTCCTTCTCTTATTCATCTTCACTTTATCGCTCGCCAAAGCACTGCCACAACAGCAGCATTCGTCCCCGCCGTTGGCACCCGACGTAGCCCTACAATGGCAGATTCGTGGACAGGTGGCAATGGACAATGGGTTGATTCGAGTCACTTTTTCTCACGAAGGCAACGTTATTGGCATAAAATACAATAACATGGATAACATACTTGATTTTCACAATGCATACAATAACAGAGCAGTAAAGGCAACCAATGTGAAGGTGGTTACAGCCACGGGTGACCAAATAGAGCTTTCATTCACCAGATATTGGAATTCTTCTGACCCTTTTTCAGTCCCTTTGAACATAGATCAGAGGTATATTTTGAGACGGGGCGATTCTGGATATTATACATATAGCATATTTGAACGGCTGGAAAATTGGCCTGAACTTGGAGTGGACGAGATCAGAATCGCCTACAAAGCCCTAAGAGACAAATTTCATTACATGGCGATATCGGACGATCGACAGAGGATCATGCCCACGCAACTGGACCGGATGACTGGGCAGCGTCTCGCTTACGCGGAGGCGGTTCTCATAACCCAACCCACCAACCCGGACCTCAAAGGAGAGGTGGACGATAAGTACCAGTACTCGCAAGAGAATATGGATAACAGGGTGCATGGATGGGTGTCTAGGGACCCAAACGTGGGGTTCTGGATGATCACGGCCAGTGATGAGTTTCGTTCGGGGGGACCGGTCAAGCAAGAACTCACATCCCACGTTGGCCCCACAACTCTTACGGTGTTCAAGAGTAATCATTATGCGGGTAAGGATGCTTCGATGAGATTTAAGGAGGGAGAAGCATGGAAAAAGGTTTTGGGCCCGGTTTTCATTTATCTAAACTCGGAACCGACCGGCACTGAAACCCCGGGTTCACTATGGGAAGATGCTAAAAACCAGATGAGGATAGAGAGGGGGAAGTGGCCGTATGGGTTCGTCGAGTCGAAAGAATTTCCAAGCTCGGAGGAAAGAGGCAGCGTTAGTGGCCGATTAATGGTCCGAGATAGATTCGCCAAGAAGGGGCAAATGTGGGCCGAGTCTGCGTTTGTGGGCCTCGCAGCTCCCGGGGAAGTGGGGTCTTGGCAAACTGAGAGCAAGGGGTATCAATTTTGGACACGAGCGGATCAAGATGGAAATTTCTTCATTCAAAATATAAGGCCAGGAAACTACAATCTCTACGCATGGGTACCCGGCGTCATTGGCGATTACAAGTACGACGGCGACGTCACCGTCACGGCGGCGAGTTCCACTAACCTGAGTGTGCTGATTTACGACCCACCACGACGAGGCCCAACTCTGTGGGAGATCGGCATCCCTGACCGGAAGGCAGCCGAGTTCTACATACCGGATCCTGAACCCACCTTAATGAGCCACTTTTACAACAACACCAAAATTCAAACCCCAGATAAGTTCCGGCAGTACGGTATCTGGGCACGCTACGCTGATTTGTACCCTGATCAGGATCTGGTGTACAACGTTGACACGGATGACTACCGCCGCCATTGGTTTTACGCTCACGTAACCAGAGCCACTGGATCCGGGGACTACCAAGCAACTACGTGGCAGATTGTGTTTCGTCTTCGAGGACCCATAAAGACCGGAACCTATACGCTCCGGTTGGCGTTGGCCTCCAGTAGTCATGGGGTGGTCGATGTCCGGTTCAACAACCCGATGGCCAGACGACCTGCTTTCACGACTGGGTATTGGAACGCAGGAAGAGATAACGCAATTGCAAGACATGGCATTCATGGGCTTTATCGGTTATTCAACTTCGATGTTCCCAGTTATTATTTGGTCGAAGGAGACAACGTAATCTATCTTACACAGAGAAGACATGCAGGTCCTTTCCAAGGAGTAATGTACGACTACATACGATTTGAAGGTGTAGAGTAG 1998 49.6 MEKKDRRRSTQPWIWKLELSSMALLLLFIFTLSLAKALPQQQHSSPPLAPDVALQWQIRGQVAMDNGLIRVTFSHEGNVIGIKYNNMDNILDFHNAYNNRAVKATNVKVVTATGDQIELSFTRYWNSSDPFSVPLNIDQRYILRRGDSGYYTYSIFERLENWPELGVDEIRIAYKALRDKFHYMAISDDRQRIMPTQLDRMTGQRLAYAEAVLITQPTNPDLKGEVDDKYQYSQENMDNRVHGWVSRDPNVGFWMITASDEFRSGGPVKQELTSHVGPTTLTVFKSNHYAGKDASMRFKEGEAWKKVLGPVFIYLNSEPTGTETPGSLWEDAKNQMRIERGKWPYGFVESKEFPSSEERGSVSGRLMVRDRFAKKGQMWAESAFVGLAAPGEVGSWQTESKGYQFWTRADQDGNFFIQNIRPGNYNLYAWVPGVIGDYKYDGDVTVTAASSTNLSVLIYDPPRRGPTLWEIGIPDRKAAEFYIPDPEPTLMSHFYNNTKIQTPDKFRQYGIWARYADLYPDQDLVYNVDTDDYRRHWFYAHVTRATGSGDYQATTWQIVFRLRGPIKTGTYTLRLALASSSHGVVDVRFNNPMARRPAFTTGYWNAGRDNAIARHGIHGLYRLFNFDVPSYYLVEGDNVIYLTQRRHAGPFQGVMYDYIRFEGVE 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2605890 2609177 - Carg18492-RA Car07g00516 151750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00516 665 Pfam Rhamnogalacturonate lyase family 50 226 IPR010325 -
Car07g00516 665 Pfam Polysaccharide lyase family 4, domain II 382 454 IPR029413 -
Car07g00516 665 Pfam Polysaccharide lyase family 4, domain III 467 660 IPR029411 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00516 Car-Chr7:2605890 Car09g00530 Car-Chr9:2983546 0 dispersed
Car12g00194 Car-Chr12:1225621 Car07g00516 Car-Chr7:2605890 0 wgd
Car03g00778 Car-Chr3:6488716 Car07g00516 Car-Chr7:2605890 0 wgd
Car04g00798 Car-Chr4:4620517 Car07g00516 Car-Chr7:2605890 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00516 K18195 - csv:101206696 924.08