Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00553 ATGAATAATGTTAATGGCAACAACTGTAACTGGTTAGGTTTCTCTGTGTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTGCTGCTGCCTCCCCTTCAATTCCTGCAAATCTTTTCCACTCCCCATCTCAGTATAACTATGGCATTTACTATGGAGTTGATGGAGAACATGGTGGTTTTTATTCACCATTGTCGGTCATGCCGCTCAAGTCTGATGGTTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCACCCAGAAGCGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCTACTATGGGGTCCCATCACTATGAAAGCAATGCCAGGGAAGCTATTGCTCTCAGCTTAGACAGTATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTATGCACATTTTTCATCCTTAAGAAGCCGTGAAGTGATGCTTCAAGACTCGAAGGTAATTCTGCCCGATGGGTGCAATCTGCAGCAGCAGCAACAGCAGCAGCACCCAACAGTGGCAGAGAATGAGATTTCTGGTATGAAGAATTGGGCTGTTCCTAGGGGCTATGCTGCCACTGACAATAGTTCCTTCGAACAGAAGATGGTGAGTTTCATGAGTGAAAATGGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGTCCCAGCTCTCAATCAAGCTGTGTCACAGCCACACAGCATGTCTCACCTGCCATGGGTGACTGTTCTGCCATGGATTCAAAGAAAAGAATCCATGAGAAGTTGGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGTCAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGGAGGTTATGATATGGAAGAGAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTACTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGTAGGCAGGAATATGTTGCTCATCTGAGAAGGCAAGAACATTTTTACCATGAGAGAAGCAGCGGATTCTCGAGGGGGGCCTCGATTTACAGAGGCGTAACAAGGTCTAATAAGTCTCAACTCAAAGCTTTACATCATCAACATGGAAGATGGCAGGCTCGGATAGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCGGCCGAGGCCTACGACATAGCAGCCATAAAATTTCGAGGAATGAATGCAGTTACTAATTTTGATATCACAAGGTATGACGTCGAGCGGATCATCGCTAGCAACACGCTTCTTAGTGGCGATGTAGCTAAAAGAAAGCAGCAGCCGGATTTTAATAATGAATCTCTTAGTGAAAGCACTCCTACTCACAACAGCAATGCAGAGGCCTCTATGCCTTTGCCCTCACAGAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTCTATCAGTCATCCCAGCAGCAGCTCATTCCTCCAAAGCCTCGGTTGTTGTCTGCAATAACCGATGATGGTTCACAGCTAGGAGTCGAAGACTCGGCCAAAATGATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACCAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCAATGGTTTTCGGAATGCCTCAACCGACATCTAGGCCGTTCGCTGCCCCAGCTAGTAATATGAACTCCTCCTCCTCCTGGATTGCATCTGCCCAACAGTTGAGGGCAGCCAATTGTATGAGCCAGTTGCCAGTTTTTGCTGGGTGGAGTGATACTTAA 1950 46.21 MNNVNGNNCNWLGFSVSPNVNMELSSSSAAAASPSIPANLFHSPSQYNYGIYYGVDGEHGGFYSPLSVMPLKSDGSICSMEALSRQHPEAVSSSTPKLEDFFGGATMGSHHYESNAREAIALSLDSIFCHQNPTHEPNNQPYAHFSSLRSREVMLQDSKVILPDGCNLQQQQQQQHPTVAENEISGMKNWAVPRGYAATDNSSFEQKMVSFMSENGGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMGDCSAMDSKKRIHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRQEHFYHERSSGFSRGASIYRGVTRSNKSQLKALHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDVAKRKQQPDFNNESLSESTPTHNSNAEASMPLPSQSSQSESDWKMALYQSSQQQLIPPKPRLLSAITDDGSQLGVEDSAKMMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQPTSRPFAAPASNMNSSSSWIASAQQLRAANCMSQLPVFAGWSDT 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2818030 2821108 - Carg18529-RA Car07g00553 151787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00553 649 Pfam AP2 domain 419 459 IPR001471 GO:0003700|GO:0006355
Car07g00553 649 Pfam AP2 domain 294 349 IPR001471 GO:0003700|GO:0006355
Car07g00553 649 ProSiteProfiles AP2/ERF domain profile. 294 357 IPR001471 GO:0003700|GO:0006355
Car07g00553 649 ProSiteProfiles AP2/ERF domain profile. 400 467 IPR001471 GO:0003700|GO:0006355
Car07g00553 649 MobiDBLite consensus disorder prediction 494 528 - -
Car07g00553 649 Coils Coil 358 378 - -
Car07g00553 649 MobiDBLite consensus disorder prediction 489 528 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00553 Car-Chr7:2818030 Car11g00359 Car-Chr11:1969480 1.55E-111 dispersed
Car01g01376 Car-Chr1:12078855 Car07g00553 Car-Chr7:2818030 2.79E-14 wgd
Car12g00555 Car-Chr12:3699394 Car07g00553 Car-Chr7:2818030 1.76E-178 wgd
Car03g00809 Car-Chr3:6661442 Car07g00553 Car-Chr7:2818030 0 wgd
Car05g00104 Car-Chr5:544015 Car07g00553 Car-Chr7:2818030 0 wgd
Car07g00553 Car-Chr7:2818030 Car09g00261 Car-Chr9:1428446 8.95E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3845 PF00847 AP2 4.30E-10 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00553 K09285 - csv:101203323 1070.07