Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00569 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCGGGAAAATGGCGCACAATACTAACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGACAAGTGGAGAAATATAAATGTTACTGCAATATGGGGCTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATCCTTTGGCCCTAAAACATCACGATGATCCTATGCCTGTAAGCACCGTGCATCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAATTCGCACTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTGAAGCATATGACGGCAAATGGAAAGTTGATAAAGGTAAAGCACAAGTACAGAATTGATCCAAATTCAACCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACCAAATCCCAAGTTGACTCAGAACTTTCAAAGATGAAGATAATGACTACAGAGGAGGCGGCTGTAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCGGCAATGAAGGCATTGGAGTGCAGAATGTTCCCTAGTAGAAGTCCTATTCAAAAAGTTCTTCTCCAAGGCAACGTGTTCTGA 921 44.19 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNPLALKHHDDPMPVSTVHQNEEIVDAKPLAISNGTIRTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIDPNSTLSGRRNVPLLLLEDKQMDSSKAEKSEVKIITKSQVDSELSKMKIMTTEEAAVAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRMFPSRSPIQKVLLQGNVF 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2884994 2890981 + Carg18545-RA Car07g00569 151803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00569 306 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Car07g00569 306 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car07g00569 306 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Car07g00569 306 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car07g00569 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Car07g00569 306 Coils Coil 240 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00041 Car-Chr1:212081 Car07g00569 Car-Chr7:2884994 1.27E-25 dispersed
Car04g00417 Car-Chr4:2361630 Car07g00569 Car-Chr7:2884994 1.82E-68 dispersed
Car07g00569 Car-Chr7:2884994 Car14g01104 Car-Chr14:9789328 5.31E-36 dispersed
Car03g00826 Car-Chr3:6723064 Car07g00569 Car-Chr7:2884994 5.17E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3849 PF00538 Linker_histone 3.40E-11 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00569 K09422 - csv:101202913 469.159