Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00603 ATGCCGAGGGGTTTGAAGAGTAATTGCCAGTCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTGAATGATCTTCAAGGGATATTCACTAATCTTCAATCTGCAAGGAAGGAGAGTCGTACTACTGACGTTGCTGTCTTGGAGGAGCAAGTGCATCAGATGCTCAGGGAGTGGAATGCCGAGCTCAATGAACCATCCCCTGCCTCTTCATTTGTTGAGGGCAGTCTTGGATCGTTCTCGCAAGAATTAGCTCGTCTTCTCGAGCATTTTGATGAGGAAGATGATGCAACTAGCACATTGGCTGAACCAAAGGTTGAGCCTGATCAACATTGCGTTCTTGCTTGCAATCCGTCCGATTTTCAGCAGCAGCAGAGTGTTCTTGGATTTGAAGAGTGCAAAGTCAATAGTGAAGATTTCAAATTAGATCAGAACTTTATGCAGAACTTAGTGGTCGGTATGGATGATATGTCTACTGTGGATTGTCGTTTATTGGATTCGCACCAAGAGTTCGACTATGGGGTGCTTATCGGGGCGTATGATGCGGGAGACTTTAGTCAGGACACAAAGCCTAGCATTCCCCCATACATCTCGCCCCCGCCATCTGCTTTTATGGGGCCAATGTGTGCACTCTGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGCCAGGACTATTGCAGTAGCTGTCATTCCATGCTTGCAATAAATGAAGGCCTTCCAGGAATGGCTCCAATATTGCGCCCTGGGGGCACTGGCTTAACAGATGGTCCACTATTTGCTGCTCTTCTTGCAAAGACACAGGCCAAAGAGGTGGGAATACCTATATGTGATGGTGCTGCAACAAGAAAATCTCCATGGAATGCTCCTGAGCTTTTTGATATTTCATTCCTCGAGGGTGAGACAATCAGGGAATGGCTCTATTTCGACAAACCTAGACGGGCCTTTGAGAGTGGTACTCGAAAGCAAAGGTCATTACCAGATTATAGCGGCCGTGGTTGGCATGAATCAAGGAAGAAGGTGATGGAGGAGTTCGGTGGTCAGAAGAAGTCCTATTACATGGATCCACAGCCATCAAGCTCACTCGAATGGCATTTGTACGAATATGATATAAGCAATTATGATTCATTTGCATTATATAGGCTAGAACTCAAGCAAGCTGGTGCAAAAAAGAGCCCAAAGGGAAAACTACCAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGCAGGCTTACTGCAAAGGGGCCTGTGGAGCTTGGACAATCAGTCAAATAA 1287 46.15 MPRGLKSNCQSTSHQLLKEKAKNRVNDLQGIFTNLQSARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHFDEEDDATSTLAEPKVEPDQHCVLACNPSDFQQQQSVLGFEECKVNSEDFKLDQNFMQNLVVGMDDMSTVDCRLLDSHQEFDYGVLIGAYDAGDFSQDTKPSIPPYISPPPSAFMGPMCALWDCFRPAQGSKWCQDYCSSCHSMLAINEGLPGMAPILRPGGTGLTDGPLFAALLAKTQAKEVGIPICDGAATRKSPWNAPELFDISFLEGETIREWLYFDKPRRAFESGTRKQRSLPDYSGRGWHESRKKVMEEFGGQKKSYYMDPQPSSSLEWHLYEYDISNYDSFALYRLELKQAGAKKSPKGKLPADPLADLQKKMGRLTAKGPVELGQSVK 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3049951 3052389 - Carg05122-RA Car07g00603 151837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00603 428 Coils Coil 18 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00603 - - - cmax:111469812 867.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00557 Car-Chr20:3061332 Car07g00603 Car-Chr7:3049951 0 wgd
Car07g00179 Car-Chr7:1027515 Car07g00603 Car-Chr7:3049951 1.10E-166 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car07g00179 CST 2 482 VOZ-9 Transcription Factor Family AT1G28520 70.4 2.6e-198 688.7
Car03g01162 CST 2 492 VOZ-9 Transcription Factor Family AT1G28520 69.0 1.1e-193 673.3
Car20g00557 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.2 2.4e-135 479.6
Car07g00603 . 6 422 VOZ-9 Transcription Factor Family AT1G28520 58.0 3.6e-131 465.7
Car07g00179 CST 27 422 VOZ-9 Transcription Factor Family AT2G42400 51.3 1.3e-103 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3855 None None None None Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00603 Car_Chr07 FPKM 0.733016 0.657345 1.422739 1.332807 10.757507 12.105161 11.066794 2.462498 2.039811 1.993223