Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g00640 | ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA | 456 | 46.93 | MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNITCPLCRTPLMPEEETASCFW | 151 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3246844 | 3247299 | - | Carg05161-RA | Car07g00640 | 151874 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g00640 | 151 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 151 | - | - | |
| Car07g00640 | 151 | SUPERFAMILY | RING/U-box | 84 | 143 | - | - | |
| Car07g00640 | 151 | SMART | ring_2 | 95 | 136 | IPR001841 | - | |
| Car07g00640 | 151 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 142 | IPR013083 | - | |
| Car07g00640 | 151 | PANTHER | - | 1 | 151 | IPR044249 | - | |
| Car07g00640 | 151 | Pfam | Ring finger domain | 94 | 137 | IPR001841 | - | |
| Car07g00640 | 151 | ProSiteProfiles | Zinc finger RING-type profile. | 95 | 137 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01798 | Car-Chr4:10315467 | Car07g00640 | Car-Chr7:3246844 | 4.23E-22 | dispersed | |
| Car07g00640 | Car-Chr7:3246844 | Car15g01120 | Car-Chr15:8843502 | 2.21E-14 | dispersed | |
| Car17g00421 | Car-Chr17:2800953 | Car07g00640 | Car-Chr7:3246844 | 6.73E-06 | transposed | |
| Car20g00604 | Car-Chr20:3399356 | Car07g00640 | Car-Chr7:3246844 | 5.26E-97 | transposed | |
| Car19g00652 | Car-Chr19:7829713 | Car07g00640 | Car-Chr7:3246844 | 1.88E-72 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g00640 | K16285 | - | csv:101216645 | 290.812 |