Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g00641 | ATGGGTGTTATGTGTGATTTTTGTGGGGATCAAAGGGCAATGGTTTTCTGTCGATCTGATGTTGCTTGTTTGTGCTTATCTTGTGATCGTAATGTTCATTCGGCTAACGCCTTGTCGAGGCGTCATACAAGAACGCTGTTATGTGAGAGATGCCATTTGCAACCTGCCTCAGTAAGATGTATTGATGAGAGGGTTTCTCTGTGTCAAAATTGTGACTGGACGGGTCATGGCACGTCTACGACTTCATCATCGCACAAGAGGCAAGCTATCAATTGTTACTCTGGTTGTCCATCAGCTGCTGAGCTTTCTTCCATCTGGTCCTTTGTTTTGGAGGTTCCCTCTGTGAATGATGCTTGTGAGAAAGAGATGGGATTGATGAGCATTTCTGAGACCGAATTGACGGGAGCTTGGAGCCCTTCGGAGAATAACAACGCCTGTCGAAGAATGCCCGAGTCGACTGAAATCTTGAAGCATCACATTTTTGGCATGCAGTTTTGCTGTCCTGGAGCAAAACTTCCCGGATTCTGCGGTGATGACGACGACGACATCTACAAGGAGTTCGATATGGACGAAATGGATTTGAATCTCGAAAATTACGAGGAGCTATTTGGTATGAGCCTTAATCATTCTGAAGATCTTTTCGAGAACGGTGGAATCGATAGCCTTTTCGAGGCCAAAGGCTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGCTCTTCTGCTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCCGCTGACTCGGTTATGAGTACTAAAACCGAACCGATTCTCTGTTTTAATTCAAGGCAAGCATCGGGTGTGTCGTTTTCTGGCGTTACGGGTGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCTTCGTCCATGCTTCTAATGGGAGAGCCTCCTCCTTGGTGTGCTCCTGGCACTGAAAGTTCGATCCCATCTTCTGATCGTAACAATGCCGTTCTACGTTACAAGGAGAAAAAGAAGACGCGCAAATTTGAGAAACGAGTAAGATACGCAACACGCAAAGCTCGAGCCGATGTGAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGTCGGAGAGGCGTATGATTACGACCCGTTGAGCCAGACTAGAAGCTGCTGA | 1155 | 47.45 | MGVMCDFCGDQRAMVFCRSDVACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPASVRCIDERVSLCQNCDWTGHGTSTTSSSHKRQAINCYSGCPSAAELSSIWSFVLEVPSVNDACEKEMGLMSISETELTGAWSPSENNNACRRMPESTEILKHHIFGMQFCCPGAKLPGFCGDDDDDIYKEFDMDEMDLNLENYEELFGMSLNHSEDLFENGGIDSLFEAKGFEDSVCHSAVAAEGSSAGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQASGVSFSGVTGESSAGDYQDCGASSMLLMGEPPPWCAPGTESSIPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKVGEAYDYDPLSQTRSC | 384 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3251437 | 3254084 | - | Carg05162-RA | Car07g00641 | 151875 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g00641 | 384 | Pfam | B-box zinc finger | 4 | 45 | IPR000315 | GO:0008270 | |
| Car07g00641 | 384 | ProSiteProfiles | CCT domain profile. | 327 | 369 | IPR010402 | GO:0005515 | |
| Car07g00641 | 384 | ProSiteProfiles | Zinc finger B-box type profile. | 43 | 90 | IPR000315 | GO:0008270 | |
| Car07g00641 | 384 | Pfam | CCT motif | 327 | 369 | IPR010402 | GO:0005515 | |
| Car07g00641 | 384 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00129 | Car-Chr2:755014 | Car07g00641 | Car-Chr7:3251437 | 3.76E-35 | dispersed | |
| Car06g01423 | Car-Chr6:10151977 | Car07g00641 | Car-Chr7:3251437 | 1.09E-12 | dispersed | |
| Car07g00641 | Car-Chr7:3251437 | Car11g01444 | Car-Chr11:11731118 | 2.40E-151 | dispersed | |
| Car14g01014 | Car-Chr14:8520047 | Car07g00641 | Car-Chr7:3251437 | 5.94E-07 | dispersed | |
| Car20g00702 | Car-Chr20:4019655 | Car07g00641 | Car-Chr7:3251437 | 1.80E-16 | dispersed | |
| Car16g00583 | Car-Chr16:3663625 | Car07g00641 | Car-Chr7:3251437 | 2.12E-09 | wgd | |
| Car19g00649 | Car-Chr19:7815952 | Car07g00641 | Car-Chr7:3251437 | 5.65E-171 | wgd | |
| Car20g00602 | Car-Chr20:3391655 | Car07g00641 | Car-Chr7:3251437 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3863 | PF06203 | CCT | 2.60E-15 | CL0281 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g00641 | - | - | cmos:111451690 | 693.73 |