Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00641 ATGGGTGTTATGTGTGATTTTTGTGGGGATCAAAGGGCAATGGTTTTCTGTCGATCTGATGTTGCTTGTTTGTGCTTATCTTGTGATCGTAATGTTCATTCGGCTAACGCCTTGTCGAGGCGTCATACAAGAACGCTGTTATGTGAGAGATGCCATTTGCAACCTGCCTCAGTAAGATGTATTGATGAGAGGGTTTCTCTGTGTCAAAATTGTGACTGGACGGGTCATGGCACGTCTACGACTTCATCATCGCACAAGAGGCAAGCTATCAATTGTTACTCTGGTTGTCCATCAGCTGCTGAGCTTTCTTCCATCTGGTCCTTTGTTTTGGAGGTTCCCTCTGTGAATGATGCTTGTGAGAAAGAGATGGGATTGATGAGCATTTCTGAGACCGAATTGACGGGAGCTTGGAGCCCTTCGGAGAATAACAACGCCTGTCGAAGAATGCCCGAGTCGACTGAAATCTTGAAGCATCACATTTTTGGCATGCAGTTTTGCTGTCCTGGAGCAAAACTTCCCGGATTCTGCGGTGATGACGACGACGACATCTACAAGGAGTTCGATATGGACGAAATGGATTTGAATCTCGAAAATTACGAGGAGCTATTTGGTATGAGCCTTAATCATTCTGAAGATCTTTTCGAGAACGGTGGAATCGATAGCCTTTTCGAGGCCAAAGGCTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGCTCTTCTGCTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCCGCTGACTCGGTTATGAGTACTAAAACCGAACCGATTCTCTGTTTTAATTCAAGGCAAGCATCGGGTGTGTCGTTTTCTGGCGTTACGGGTGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCTTCGTCCATGCTTCTAATGGGAGAGCCTCCTCCTTGGTGTGCTCCTGGCACTGAAAGTTCGATCCCATCTTCTGATCGTAACAATGCCGTTCTACGTTACAAGGAGAAAAAGAAGACGCGCAAATTTGAGAAACGAGTAAGATACGCAACACGCAAAGCTCGAGCCGATGTGAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGTCGGAGAGGCGTATGATTACGACCCGTTGAGCCAGACTAGAAGCTGCTGA 1155 47.45 MGVMCDFCGDQRAMVFCRSDVACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPASVRCIDERVSLCQNCDWTGHGTSTTSSSHKRQAINCYSGCPSAAELSSIWSFVLEVPSVNDACEKEMGLMSISETELTGAWSPSENNNACRRMPESTEILKHHIFGMQFCCPGAKLPGFCGDDDDDIYKEFDMDEMDLNLENYEELFGMSLNHSEDLFENGGIDSLFEAKGFEDSVCHSAVAAEGSSAGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQASGVSFSGVTGESSAGDYQDCGASSMLLMGEPPPWCAPGTESSIPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKVGEAYDYDPLSQTRSC 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3251437 3254084 - Carg05162-RA Car07g00641 151875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00641 384 Pfam B-box zinc finger 4 45 IPR000315 GO:0008270
Car07g00641 384 ProSiteProfiles CCT domain profile. 327 369 IPR010402 GO:0005515
Car07g00641 384 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Car07g00641 384 Pfam CCT motif 327 369 IPR010402 GO:0005515
Car07g00641 384 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00641 - - - cmos:111451690 693.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00129 Car-Chr2:755014 Car07g00641 Car-Chr7:3251437 3.76E-35 dispersed
Car06g01423 Car-Chr6:10151977 Car07g00641 Car-Chr7:3251437 1.09E-12 dispersed
Car07g00641 Car-Chr7:3251437 Car11g01444 Car-Chr11:11731118 2.40E-151 dispersed
Car14g01014 Car-Chr14:8520047 Car07g00641 Car-Chr7:3251437 5.94E-07 dispersed
Car20g00702 Car-Chr20:4019655 Car07g00641 Car-Chr7:3251437 1.80E-16 dispersed
Car16g00583 Car-Chr16:3663625 Car07g00641 Car-Chr7:3251437 2.12E-09 wgd
Car19g00649 Car-Chr19:7815952 Car07g00641 Car-Chr7:3251437 5.65E-171 wgd
Car20g00602 Car-Chr20:3391655 Car07g00641 Car-Chr7:3251437 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00282 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Car02g00898 . 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 8.8e-58 221.5
Car10g00391 CCT 58 412 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.8e-55 213.8
Car02g00898 . 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 2.1e-64 243.4
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.7 2.5e-92 336.3
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 7.1e-87 318.2
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 3.5e-86 315.8
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 4.6e-86 315.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car20g00702 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.2 8.7e-44 174.9
Car16g00643 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 3.9e-56 214.9
Car04g00690 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 6.7e-56 214.2
Car07g00389 CST 1 139 C2C2-CO-like Transcription Factor Family AT2G21320 66.9 2.3e-48 189.1
Car03g00645 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Car16g00643 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 7.6e-58 220.7
Car04g00690 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Car07g00389 CST 1 138 C2C2-CO-like Transcription Factor Family AT4G38960 71.8 2.4e-51 199.1
Car03g00645 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Car12g00406 CST 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.2e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3863 PF06203 CCT 2.60E-15 CL0281 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00641 Car_Chr07 FPKM 3.652559 3.11046 3.170107 3.795094 1.911171 2.031836 2.135108 18.334234 18.156004 21.65238