Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00729 ATGGAAGTGGTTCCTTTGTCCGATGTTCAGCATGTTAGGGATGACTCTGATTCTGCTCAGATTTCTGGAACTGCTTCGTTTCATGACGGACAATCAAACAACTGCGTCGATCCTCAACAACAACCAGCGCGGATGGCAAATGGTGGACTCAATGACTCATCCGTGAATGTTGAGGCCGCACAAATTAACAGCAAATGTGATGTTCAAGGGGTTCCTCAATATTTGCCTGCTTCTGGTCACTCTAGTTCGGATTCATATTCTAACTATCAGATGGATGCCCAAAAAGCATCTTCTGGTTCCCCCGACTCCGAATTTGATGATGCCAACACCGATAATTACTCCACGGAATCGTGTTTAGCATCTGAAAACTCTCGTATAGTTGTGGATACCATTGACGACGAATTGCCTAGCAGCAGCAAAGCTGAGGAGTTGTCTGTTTCGGGGCCAGAGCCAATGTGGTTGGAAGGGGATGAATCTGTGGCGCTTTGGGTGAAGTGGCGAGGGAAGTGGCAGGCTGGAATTAGATGTGCAAGGGCTGACTGGCCATTATCTACTTTAAAAGCCAAACCCACACATGAAAGGAAGAAGTATTTTGTGGTTTTTTTTCCACACACAAGGAACTATTCGTGGGCAGATGCATTGCTTGTTCGTTCTATTGAAGAATTTCCTCAGCCTATTGCATACAAGAGTCACAAAGCTGGTTTAAAATTGGTTGAAGATGTAAAAGTTGCAAGGAGATTTATAATGAAAAAACTTGCTGTTGGCATGCTGAATATCATAGACCAATTTCACCTCGAGGCTCTGATTGAGAGTGCACGTGATGTAATGAATTGGAAGGAATTTGCCATAGAAGCTTCACGCTGCAATGGTTATTCTGATCTTGGTAGAATGCTTCTGAAGCTGCAGAATATGATCCTGCAATGCTTCGTAAATCCAGATTGGCTTCAAAATTCTTTGCATTCTTGGGTACAGCGATGTCAAAATGCTCAAACTGCAGAAGTTATTGAAATGCTCAAGGAGGAATTGGCTGATGCTATTTTGTGGGACAAAGTGAAATCCCACGGTGATGCGCCAGTGCAGCCTACTTTTAGTTCTGTGTGGAAAACCTGGAAGCATGAGGTTACAAAATGGTTTTCAATATATCCCACTCTTCCCATTAGCAGAGACAAGGAGCAGCAGACTGTTGAAGCTTTCTTAGCTACAGCTCTCGAAGTCAGCAGGAAGAGGCCCAAGCTTGAAATTCGTCGTGCAGAGACACAGGCTTCATTGATGGAATCAAAGTGCTCAGATGAAGCTATGGCTCCTGATAATGATTCTGGTTTTTTCAATAACCAGACAAGTTTAAATGCTAAATTAGGATCTGAATCTCACAAAGTAGAGGTAAGGAAGATTGTTACATCAGCAGGCCCACTCAGTATTGTACCTGGTAGGTTGGCTGGGATTGTAGCTCAAACTGGAAGTTTGGATCTAGCCTCTTGCAAGGATGTGGAACTGAGACCTCATACTGAAACAGCTACAGAAAAACTCTTACATTATGGTAATAAGAACCGTCAATGCATAGCTTTTATTGAATCCAAGGGAAGGCAGTGTGTTAGATGGGCCAATGAGGGTGATGTTTACTGTTGTGTGCATTTATCCTCTCGTTTCACTGGCAACAATGATAAGAAAGAACAGACTCGTTCTGTTGAATCACCAATGTGCCAAGGTACTACTGTTCTTGGAAGTAGGTGCAAGCATCGATCTCTATTTGGCTCCTCATTCTGTAAGAAGCACAGACCAAGGAGTGAAACAAACATGGAGTCAACTTCCTATGAAAATAAGCTTATTGAGAAGCAACAGGATATTTATAGAGTAGAAGACACCCGTAATAAGGAAATAAAGTTTGACAGAGATGCTGGAAATCCCCTTGGAGTGGACGAGGGTGATGTGACCAATAATGGAAATAGCTCATCTGACAAACTTGAGCATCATGGAAAAGATTCTATTGCCTCAGAGGTTCGACACTGTATTGGTTCTTCCGAACATATTGACAGCAATCCATGTTTAGAAAGCCCAAAACGTCATTCTCTATATTGTGAAAAACACCTTCCTAGCTGGCTTAAACGTGCAAGAAATGGTAAGAGTAGAGTAATATCGAAGGAAGTATTCATGGATCTTTTAAGAGACTGTAACTCAGAAGAGCAAAAGATACATTTGCATCAAGCCTGTGAGCTATTTTACAGGCTTTTTAAAAGTATTTTATCTCTGAGGAATCCAGTTCCTATGGAGGTTCAATTTCAATGGGCACTTTCTGAAGCTTCTAAAAACTTGGGAGTTGGGGAACAGTTTATGAAATTGGTTTGTCATGAAAAGGAAAGATTAAAAAGGTTATGGGGGTTCGATGCTGAAGGAGCACAACTTTCCTCACCTTCGATGGAAGTGCCAACTGCAGGGCCATTATTAACTTCAGGTAATTGCAATGATGGTTCGAGTATCAGATGCAAAATTTGCTCTGAAGAATTTCTTGATGATCAAGCACTCAGTACTCACTTCATGGATGGTCATAAAAAGGAAGCGCAGTGGCTGTTCAGAGGTTATGCTTGTGCCATCTGCCTTGATTCGTTCACCAATAAGAAAGTTCTAGAAACTCATGTGCAGGAGAGACACCATGCACCATTTGTTGAGCAATGCATGCTTCTGCAGTGTATTCCTTGTGGCAGCCATTTTGGGAATACTGATCAATTATGGTTACATGTAGTTGCTGTACATCCCATTGATTTTAGATTGTCAAATTCTACTAGGCAGCATAATTCTTCGTCTGGTGAGGATTCCCCAGTCAAACCCAAGGAGTGCAATATAGTTTCTAAGTCGAATGATAACAAGAATGTAGGTGGTTTACGTAAGTTTAATTGTAGGTTCTGCGGTTTGAAGTTTGATTTACTGCCTGATCTTGGTCGCCACCATCAAGCTGCGCACATGGGTCCAGGTTTAGCTAACTCCCGAACTGCAAAGAGGGGATTTCATTATTATGCTTATAAATTAAAATCTGGGAAACTTGGTCATCCTAGATTTAAGAAGACTTTAGCGGGTGCGTCAAACCGGATCAGAAACAGAACAAAAGCTAGCATGAAAAAACATATTCAAACTTCAAAGTTACTAAGCACAGGAAGCATAAACCTTCAACCTCATGAGTCCCACTTAGCAAGTTCTCGTAAATTGACCCAAGGTTCAACTGTTTCGAAGGCATTGGTTTCTGAGATTCAGAAAATAAAATTATTTCCTACCAATGTTGACATTTTGTCTATTGCTCACTCTGCCTGTTGCAAGGTCAATTTTAAAGTTCTTCTGGAACAGAAGTTTGGAGTATTACCTGAATATTTTTATCTTAAGGCAGCTGAATTATGCAGGGAAAAAGTTAACTGGTATATCAAGGGATTTGTCTGTCCTAAAGGTTGTGAGACACTTAAGGATCCTCTTTTGACTCCCAATTTGATGTCTCATCCAAATGGTTTTGGAGGCCACAAGAATGCACACACTTCTGATCCAGTGAGTAGCAAATGGGAAGCTCATGGATGCAGTTATGCCATCGGTTCTCATCTTTCTAGCCAGCAGCTTAAGGAAAAGGCCGTCATTTTATGTGAAGATATAAGCTTTGGCCAGGAATTTGTTCCTGTGGTCTGTGTAGCTGACGAAGGTCTAAGGAACTCACCTCACATATCTCTAGCTAACTCAGATAGTCAAGAAGTTGGATACTCCATGCCTTGGGAGAGTTTTACCTATATTAAGAAATCATTGCTCAATAAATCTCTTGCCATTGATACGGAGAGTTTGCAGTTCGGCTGTGCCTGCGCTCATTCACTCTGTTCGTCTGAAACATGTGATCATGTATACCTCTTTGATAGTGATTATGAAGACCCAAAGGACATTTATGGGAATCCCATGAGTCGCAGGTTCCCATATGATGAGAACGGTCGTATTATTCTGGAGGAAGGCTACCTTGTCTATGAGTGTAATGAAAGGTGCAACTGTAGTAGAACCTGTCCAAATAGAGTGTTGCAAAATGGAGTTCATGTGAAACTCGAAGTCTTCTTGACAGAGACGAAGGCAATTTCTTCTTTATGCACCTTTTGTGCTTTCTTTCCTGCTAACTTTTTCTTATATGAAGTTGTAAAAACAACACAGGGATGGACAGTGAGGGCTGGTGAAGTCATACTGCGTGGCACCTTTGTTTGCGAGTACATTGGGGAGGTGCTGGAGGAGCAGGAAGCAAACAGGAGACGTGACAGTTGCTCACCAAATCTTGTAGCTTACCAAGTCCTTGTCGAAAGCATGGAATATCAGCGCTCACACATTGGATTGTATGCGAACCGGGATATAGCCACTGGTGAAGAGCTGACATTCAATTATCGACGCGAGCAATCACCTGGAGGAAATGGCTGTGAATCTTCAAGTTGCTGA 4437 41.99 MEVVPLSDVQHVRDDSDSAQISGTASFHDGQSNNCVDPQQQPARMANGGLNDSSVNVEAAQINSKCDVQGVPQYLPASGHSSSDSYSNYQMDAQKASSGSPDSEFDDANTDNYSTESCLASENSRIVVDTIDDELPSSSKAEELSVSGPEPMWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHERKKYFVVFFPHTRNYSWADALLVRSIEEFPQPIAYKSHKAGLKLVEDVKVARRFIMKKLAVGMLNIIDQFHLEALIESARDVMNWKEFAIEASRCNGYSDLGRMLLKLQNMILQCFVNPDWLQNSLHSWVQRCQNAQTAEVIEMLKEELADAILWDKVKSHGDAPVQPTFSSVWKTWKHEVTKWFSIYPTLPISRDKEQQTVEAFLATALEVSRKRPKLEIRRAETQASLMESKCSDEAMAPDNDSGFFNNQTSLNAKLGSESHKVEVRKIVTSAGPLSIVPGRLAGIVAQTGSLDLASCKDVELRPHTETATEKLLHYGNKNRQCIAFIESKGRQCVRWANEGDVYCCVHLSSRFTGNNDKKEQTRSVESPMCQGTTVLGSRCKHRSLFGSSFCKKHRPRSETNMESTSYENKLIEKQQDIYRVEDTRNKEIKFDRDAGNPLGVDEGDVTNNGNSSSDKLEHHGKDSIASEVRHCIGSSEHIDSNPCLESPKRHSLYCEKHLPSWLKRARNGKSRVISKEVFMDLLRDCNSEEQKIHLHQACELFYRLFKSILSLRNPVPMEVQFQWALSEASKNLGVGEQFMKLVCHEKERLKRLWGFDAEGAQLSSPSMEVPTAGPLLTSGNCNDGSSIRCKICSEEFLDDQALSTHFMDGHKKEAQWLFRGYACAICLDSFTNKKVLETHVQERHHAPFVEQCMLLQCIPCGSHFGNTDQLWLHVVAVHPIDFRLSNSTRQHNSSSGEDSPVKPKECNIVSKSNDNKNVGGLRKFNCRFCGLKFDLLPDLGRHHQAAHMGPGLANSRTAKRGFHYYAYKLKSGKLGHPRFKKTLAGASNRIRNRTKASMKKHIQTSKLLSTGSINLQPHESHLASSRKLTQGSTVSKALVSEIQKIKLFPTNVDILSIAHSACCKVNFKVLLEQKFGVLPEYFYLKAAELCREKVNWYIKGFVCPKGCETLKDPLLTPNLMSHPNGFGGHKNAHTSDPVSSKWEAHGCSYAIGSHLSSQQLKEKAVILCEDISFGQEFVPVVCVADEGLRNSPHISLANSDSQEVGYSMPWESFTYIKKSLLNKSLAIDTESLQFGCACAHSLCSSETCDHVYLFDSDYEDPKDIYGNPMSRRFPYDENGRIILEEGYLVYECNERCNCSRTCPNRVLQNGVHVKLEVFLTETKAISSLCTFCAFFPANFFLYEVVKTTQGWTVRAGEVILRGTFVCEYIGEVLEEQEANRRRDSCSPNLVAYQVLVESMEYQRSHIGLYANRDIATGEELTFNYRREQSPGGNGCESSSC 1478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3754620 3769166 + Carg05250-RA Car07g00729 151963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00729 1478 Pfam SET domain 1422 1462 IPR001214 GO:0005515
Car07g00729 1478 MobiDBLite consensus disorder prediction 629 658 - -
Car07g00729 1478 ProSiteProfiles SET domain profile. 1351 1463 IPR001214 GO:0005515
Car07g00729 1478 MobiDBLite consensus disorder prediction 73 117 - -
Car07g00729 1478 Pfam Zinc finger C2H2-type, 3 repeats 861 986 IPR040689 -
Car07g00729 1478 MobiDBLite consensus disorder prediction 1 51 - -
Car07g00729 1478 ProSitePatterns Zinc finger C2H2 type domain signature. 895 916 IPR013087 -
Car07g00729 1478 ProSitePatterns Zinc finger C2H2 type domain signature. 827 848 IPR013087 -
Car07g00729 1478 Pfam Pre-SET motif 1230 1343 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car07g00729 1478 ProSiteProfiles Pre-SET domain profile. 1272 1348 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car07g00729 1478 MobiDBLite consensus disorder prediction 75 117 - -
Car07g00729 1478 ProSitePatterns Zinc finger C2H2 type domain signature. 964 985 IPR013087 -
Car07g00729 1478 MobiDBLite consensus disorder prediction 16 51 - -
Car07g00729 1478 ProSiteProfiles Zinc finger C2H2 type domain profile. 859 882 IPR013087 -
Car07g00729 1478 ProSiteProfiles Zinc finger C2H2 type domain profile. 962 990 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00729 - - - cmax:111497014 2900.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00706 Car07g00729 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00729 Car-Chr7:3754620 Car16g01045 Car-Chr16:8961043 3.27E-14 dispersed
Car07g00729 Car-Chr7:3754620 Car03g00170 Car-Chr3:3001603 8.53E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007882 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3875 PF05033 Pre-SET 1.10E-15 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00729 Car_Chr07 FPKM 9.198849 7.414728 7.182136 6.590555 11.584924 9.424485 11.335827 12.485119 10.049072 12.687896