Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00732 ATGGCTGAGATAAGGTTAAGTAGGTTAGAACAAGGCCAAACCAAGATTAAAAATGTGCCAATTGCTGTAACCCCAGAAGGGTTTTGGTGTTGCCCTTCTCCTGTTGTCTTCCAAAAGACCCTCAAAAATCAAAATCCTCTAAACAAGCCCAAACCTGCCTCCCCACCCCCTAAGATCCCTGTTGAGAAGAAACCGACCCTCGTGACTGATAGAAAGCCACCAGCACTCACGAGATCACGGTCGGCTGCTGTTTCTGATGACGATCGAAAAGGCAATGCTGATACTTCTGGATTTAATGCTCCAGAGGTTGTACACAGGGTATCACGGCCTAAGGTTGAAAATATGCCAAGGAAAATAGCAATTGAGTTTGGTGAGCCAGGGACTAGTAATATAAAGGTCGTTTTACTCGGGAAGCAAGGATTTTCGGTAAAGTTGAGCGTTCATAAGAACGTGTTGATGGATAATAGTACTTTTTTTGCTAATAAACTTTCTGATCAAGAAGGCTCCTCCATGGAAATTGGTGATTGTGAAGATGTTGAAATATATGTTGAAACTGTGGGATTGATGTACTGCAAAGAAATGAAGCAATGGTTGATGAAGCAAAATGTTTCTCGTGTTCTTCGAATTCTGAAGGTTGCTGAATTTCTTGGTTTTATGTCATGCATGCAATCATGTCTAGAATATTTGGAAGCAGTCCCCTGGGTTGGTGACGAAGAAGAAGAAAAGGTCGTCACGTCCATCCTACGACTTCAAAGAGAGGGCATTGGGGTGAGCCCGGTATTGAAACGAGTGTCTGCAGATGTGTCTAAGCCCCATAAAGATACTCTTTCTCATATCATTGAACTTGTTCTTAAAAGCAACGAGGAGCGAGGTCGACGTGAAATGAAACTGGTGGTACTGAGGCTTCTTAGGGAGAACCAAAGCGTCCCGAGCCACGCGAACTCAGCTGACATTTGCAATGAAACTATTTACTCTTCTTGCAGAAGCTGTTTGGGATCACTATTGCTACTGTTCCAGAAGGCTACTGAAACAGAGTTTATTGACAGATCAGTAGACAGGAAAGAACCAGTGCTGAAGCAAATTACTCTAGAGGCCGATAACCTTTCGTGGTTGCTCGAGATTTTAGCTGACAGGCAAGCGGCTGATGAGTTTGCGGTAATGTGGTCGAAGCATCAGGAACTAGCAGCCCTCCACGCGAAGCTGCCGATCGTATCTCGCTACCATGTTAGCTGCATAACAGCAAGGCTATTTGTTGGCATTGGCAAAGGAGAGCTGTTACCAGCAAAGGATACACGTAAATTACTATTACATACATGGTTAGAGCCATTAATCAATGATTATAGCTGGTTAAAACATGGTTGTGGGTCGTTTGATCGAAAAGTCGTGGAAGAAGGAATCGGTCGGACGATCCTCACTCTCCCACTTGAGGATCAGCAAAGCATTTTGCTGACTTGGTTGGGCAGTTTTCTTAAGGTTGGAGATAGTTGCCCAAATCTCCAAAGAGCGTTCGAGGTTTGGTGGCGTCGGACCTTCGTACGACCTTACGTCGAGACACAAGGAAGCAACCCAATCACCCCCCAGTTGGAGCCTTGA 1593 44.82 MAEIRLSRLEQGQTKIKNVPIAVTPEGFWCCPSPVVFQKTLKNQNPLNKPKPASPPPKIPVEKKPTLVTDRKPPALTRSRSAAVSDDDRKGNADTSGFNAPEVVHRVSRPKVENMPRKIAIEFGEPGTSNIKVVLLGKQGFSVKLSVHKNVLMDNSTFFANKLSDQEGSSMEIGDCEDVEIYVETVGLMYCKEMKQWLMKQNVSRVLRILKVAEFLGFMSCMQSCLEYLEAVPWVGDEEEEKVVTSILRLQREGIGVSPVLKRVSADVSKPHKDTLSHIIELVLKSNEERGRREMKLVVLRLLRENQSVPSHANSADICNETIYSSCRSCLGSLLLLFQKATETEFIDRSVDRKEPVLKQITLEADNLSWLLEILADRQAADEFAVMWSKHQELAALHAKLPIVSRYHVSCITARLFVGIGKGELLPAKDTRKLLLHTWLEPLINDYSWLKHGCGSFDRKVVEEGIGRTILTLPLEDQQSILLTWLGSFLKVGDSCPNLQRAFEVWWRRTFVRPYVETQGSNPITPQLEP 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3773337 3776000 + Carg05253-RA Car07g00732 151966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00732 530 Gene3D Potassium Channel Kv1.1; Chain A 125 232 IPR011333 -
Car07g00732 530 SUPERFAMILY POZ domain 143 230 IPR011333 -
Car07g00732 530 MobiDBLite consensus disorder prediction 43 98 - -
Car07g00732 530 PANTHER BTB/POZ DOMAIN PROTEIN 1 522 - -
Car07g00732 530 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 1 522 IPR038920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00732 - - - bhj:120073152 949.118
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00987 Car-Chr3:7604528 Car07g00732 Car-Chr7:3773337 2.41E-61 dispersed
Car07g00732 Car-Chr7:3773337 Car15g01121 Car-Chr15:8851318 1.07E-98 dispersed
Car19g00507 Car-Chr19:6736137 Car07g00732 Car-Chr7:3773337 3.92E-10 dispersed
Car03g00921 Car-Chr3:7247735 Car07g00732 Car-Chr7:3773337 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g899 Blo04g00957 . Bda04g00314 . . . Bma09g00339 . . . . Cma07g00745 . Car07g00732 . . . . . . . . . . . . . . . . . . . Cone6ag1355 . Lsi01g01042 . . . . . . . . Bpe06g00241 . . . . Cmo07g00765 . . . . . . . . . . . . . . . . . . . . . . Chy02g00962 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004743 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00732 Car_Chr07 FPKM 0.798242 0.763093 1.569148 1.249602 2.022818 2.17067 2.884241 1.779768 1.935526 1.648471