Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00734 ATGGCAGAAATGGACATAACAACATCTCTCCCTTCAACTGGTGACATGGAAGAAGCTGATCAAGTGGAAGTTGATTATGTTAAGGCATTATCACTCTCACAAATGGAATTTGAAAATGAACAAGATTTGATCATTGAGAGAAAGATAAAGGAAACCCTCAATGTCCAAACTGAAGAGGATGAGCAGCTTGCCAATGCAATGCAACTAAGCTTAGTCATGGCGTCTTCTAAAGCTGTTTCTTCTGCATTCAAGATTGTCTGTGCTGGATGCAACAATGAGATAAGTCGACGCGAAAATCGTTTCGATTGTAATGGTGTTGTTTGGCATGTTAAATGTCTCCAATGCCATGCTTGCATACAACCGATCAAAGATGACCAGTTCTACATGGCTGAAAATCGACCTTACCACACATCTTGCCCTAGGAATAAGAGTCATCTCAAATGCTATGTATGCAATGACTTTATCCCATATATTGGTAAGGAGGTCGAATGTGGAGAGCATCCTTTTTGGGCACAAAAGTACTGCCCGTCCCATGAAGATGATGGAACTTCCAAATGTGCTAGCTGTGAAAGGTTGGAGCCAAAAGGACGGGAGTACATTTTACTCCAAGATGGCAGAAGTTTATGTGTAGAGTGTTCCACCTTCATGATCATGGACACCAAAGAGTGTCAACCTCTTTTCCGTGAGATACAAGAGTACTTCACAAGTTTAGACATGAAACTGGACCAAAAAATTCCATTGTTGTTGGTCGAAAGGGAAGCATTGAATGAAGCCATGAAAGGGGAAAGGAATGGACACCACCATTTATCTGAAACTCGAGGACTCTGCGTGTCAGAAGAGCAAATCATTCCCGTTATTCATGAGAGGAAACATACGGAAAGATACTCACCCTTGAACACACAGCCTTTCAGACTTGTTCGTAGTTGTGAAGTTAATGCTATACTCATTCTATATGGTCTTCCCAGGCTATTGACTGGATCCATTCTAGCACATGAGATGATGCATGCATGGCTTAGACTTCAAGGCTATCCCAATTTAAAACCTGAAATCGAAGAAGGAATCTGCCAAGTCCTCGCTCACATGTGGCTGAAATCCAAGATCAATATGGGATCTGAAGCAACCATGATTGCTAGCTCGTCTTCTACCCGACAACCTCCACGTTCAAACAAGCACAAGCAGCTGAGTAAAATCGAGCAGAAACTCGGTGAATGCTTCGTTCGCCAAATCGAGCTGGATAACTCCGAAGCTTATGGAGATGGGTTCAGGGTGGGAGAACAGGCTGTTTCTCAGTATGGCTTAAAGGAGACTCTTCATCACATCAAACGCACTCGAAACTTTCCATTTTAA 1347 42.61 MAEMDITTSLPSTGDMEEADQVEVDYVKALSLSQMEFENEQDLIIERKIKETLNVQTEEDEQLANAMQLSLVMASSKAVSSAFKIVCAGCNNEISRRENRFDCNGVVWHVKCLQCHACIQPIKDDQFYMAENRPYHTSCPRNKSHLKCYVCNDFIPYIGKEVECGEHPFWAQKYCPSHEDDGTSKCASCERLEPKGREYILLQDGRSLCVECSTFMIMDTKECQPLFREIQEYFTSLDMKLDQKIPLLLVEREALNEAMKGERNGHHHLSETRGLCVSEEQIIPVIHERKHTERYSPLNTQPFRLVRSCEVNAILILYGLPRLLTGSILAHEMMHAWLRLQGYPNLKPEIEEGICQVLAHMWLKSKINMGSEATMIASSSSTRQPPRSNKHKQLSKIEQKLGECFVRQIELDNSEAYGDGFRVGEQAVSQYGLKETLHHIKRTRNFPF 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3791036 3797421 + Carg05255-RA Car07g00734 151968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00734 448 ProSiteProfiles LIM domain profile. 85 146 IPR001781 -
Car07g00734 448 Pfam LIM domain 87 138 IPR001781 -
Car07g00734 448 Pfam Protein DA1 237 443 IPR022087 -
Car07g00734 448 ProSitePatterns LIM zinc-binding domain signature. 87 122 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00734 - - - csv:101204053 621.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00734 Car-Chr7:3791036 Car20g00994 Car-Chr20:11556228 5.39E-26 dispersed
Car12g00468 Car-Chr12:2948576 Car07g00734 Car-Chr7:3791036 2.65E-145 wgd
Car05g00178 Car-Chr5:949704 Car07g00734 Car-Chr7:3791036 1.98E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g902 . . . . . . . . . . . Cma07g00747 . Car07g00734 . . . . . . . . . . . . . . . . . . . . . Lsi01g01044 . . . . . . . . . . . . . Cmo07g00768 . . . . . . . . . . . . . . . . . . . . . . Chy02g00964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010044 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 7 2 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3877 PF12315 DA1-like 7.00E-86 CL0126 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00734 Car_Chr07 FPKM 2.097792 3.077177 0.984132 0.666681 4.293654 4.292087 3.557057 0.776195 0.0 0.244789