Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00735 ATGGGTTCCTTCAAATTCCATTTCTTCATCGCCTCTCTGTTTTGCTTCTTCTCTTTAATTGCTTCTCAGCAACCCTACACCGGACCGACCACCGCCGATTGTGACATCCCCCACAATTCCACCGGAAATTTGGGTTACTTCTGCAACACCCCCAATCGGAGCTGCCAATCCTTCCTCACCTTCAGATCTCGCTCTCCGTTTAACTCTGTTTCTTCCATCTCTGCTCTCTTGGGTTCCGACCCGTCGGAGATCTCTCGGGTCAATTCCGTCGACGCTTCCGCCACTTTCCCGCCGGAGAAATTGGTGCTTGTTCCAACCCGTTGTTCCTGTTCCGGTCAGTTTCTTCAGGCTAATGTTTCTTTTACAACACAACGGGGAGATACTTATTTAGAGATTGCCAATGATACCCTGCAAGGCCTCTCGACTTGCCAATCTCTTATAGCTCAGAACCCAAATCTTAATGCCACGAGTATAAAAGGTGGGGAAAGGATTCGTGTTCCTCTTAGATGTGCTTGTCCGACCAAGAATCAAACCGATATGGGTTTCAATTACCTTCTGAGTTACTTAATTTTATTCGATGATATTATTTCTGGAATCGCTGAAAGATTTGAATCATTTGGTGCGGATATTGGGACTATTCTTGCAGCCAACGAGCTTGGAGAAGAATCCAACATCAACCCTTTTACGACCCTTTTAATTCCCCTTAAAACTGAGCCGTCGAGCTCTGGAATGAAAGAGCCTTCGTCGTTGCCGCTGCCGCCACCGCCGCCATCTCCAGCCACTCCACCACCTCCAATCTCTAAAAAAACATGGGTTTATGTTGTCGTCGCCGTTGTAGGAGGTGTTGTTTTAGCAGCTGCAATTGGGGGTGTCGTTTTCTTTGTGTGTGTGAGGAAAAAGAAGAAGAAAACTGAGTATTCAGCGACTGAAATTGATAGCTTTACATCATATGAGAAGCCATCAGAGAAAAAAATGGATGGAGAATCATCTTCTATCACATTGGAGAGTATTTCCAGCATTGCTCAATCTGTCAAAGTCTACAGTTTCAAAGAACTACAAGCTGCAACTGATAATTTCAATTCAACCCATTTGATCAAAGGATCTGTTTATCATGGCACAATCAATGGAGACTCAGCAGCTATTAAGAAGATGAACGGAGACGTGTCGAAACAAGTCAATTTACTTAACAAGACGAACCATTCGAACCTGATTCGTCTTTCGGGGGTCTGTTTCGACGAAGGGCATTGGTATCTTGTTTATGAATATGCTGCTAAAGGTCCCTTGAGTGATTGGATTGTTTCAAATGGTAGTAGCAATGACAAGTTCTTGAGTTGGACGCAGAGGATACAGATCGCTGTGGATGTCGCGACGGGGCTTAATTATCTCCATAGTTTCACGAATCCGCCTCATGTTCATAAGGATTTGAAGATGGATAACATACTTCTTGACAGTGATTCCCGAGGTAAGATCTCGAACTTCAGCCTAGCAAGATCGGCAGGATGGGAAGAAGGCGAGTTTACACTGACAATGCACATCGTTGGAACGAGAGGTTACATGGCTCCTGAGTATCTCGAGAACGGTTTGGTGTCTACAAAGCTCGATGTTTATTCATTTGGTGTTTTGATGATTGAAATGCTCACTGGGAAAGAGGTATCAGAGTTGTACAGAGAGGAGAATTTGCAATTGGGTGATGTTCTTAAGAAGGTGCTTGATGAGGAAGATGGGAAGGAGTATTTAAGCCATTTGATGGATTCTTCATTAGAAGGTTACTTTTCGATCGAGCTTGCTATTCTCGTGATGAGTATCGTCGATAAGTGCTTGAACAAAGATCCATCTCAACGCCCATCGATGGACGAGATAGTTCAATCGCTTTGTAGAATTTTAAGCAGTTCTGTATCATGGGAATTGTCGAACACTTCTGTGAGACAGCCAAATTCAGAACAAAGCTGA 1950 44.0 MGSFKFHFFIASLFCFFSLIASQQPYTGPTTADCDIPHNSTGNLGYFCNTPNRSCQSFLTFRSRSPFNSVSSISALLGSDPSEISRVNSVDASATFPPEKLVLVPTRCSCSGQFLQANVSFTTQRGDTYLEIANDTLQGLSTCQSLIAQNPNLNATSIKGGERIRVPLRCACPTKNQTDMGFNYLLSYLILFDDIISGIAERFESFGADIGTILAANELGEESNINPFTTLLIPLKTEPSSSGMKEPSSLPLPPPPPSPATPPPPISKKTWVYVVVAVVGGVVLAAAIGGVVFFVCVRKKKKKTEYSATEIDSFTSYEKPSEKKMDGESSSITLESISSIAQSVKVYSFKELQAATDNFNSTHLIKGSVYHGTINGDSAAIKKMNGDVSKQVNLLNKTNHSNLIRLSGVCFDEGHWYLVYEYAAKGPLSDWIVSNGSSNDKFLSWTQRIQIAVDVATGLNYLHSFTNPPHVHKDLKMDNILLDSDSRGKISNFSLARSAGWEEGEFTLTMHIVGTRGYMAPEYLENGLVSTKLDVYSFGVLMIEMLTGKEVSELYREENLQLGDVLKKVLDEEDGKEYLSHLMDSSLEGYFSIELAILVMSIVDKCLNKDPSQRPSMDEIVQSLCRILSSSVSWELSNTSVRQPNSEQS 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3795354 3797303 - Carg05256-RA Car07g00735 151969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00735 649 Pfam LysM domain 194 234 IPR018392 -
Car07g00735 649 SUPERFAMILY Protein kinase-like (PK-like) 333 624 IPR011009 -
Car07g00735 649 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Car07g00735 649 Gene3D Transferase(Phosphotransferase) domain 1 424 642 - -
Car07g00735 649 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 4 638 - -
Car07g00735 649 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 4 638 - -
Car07g00735 649 ProSiteProfiles LysM domain profile. 186 233 IPR018392 -
Car07g00735 649 Pfam Protein kinase domain 375 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g00735 649 MobiDBLite consensus disorder prediction 248 263 - -
Car07g00735 649 ProSiteProfiles Protein kinase domain profile. 282 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car07g00735 649 MobiDBLite consensus disorder prediction 238 263 - -
Car07g00735 649 SMART serkin_6 359 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00735 - - - cmax:111497016 1186.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00735 Car-Chr7:3795354 Car14g01593 Car-Chr14:12919959 8.56E-100 dispersed
Car15g00629 Car-Chr15:3496388 Car07g00735 Car-Chr7:3795354 1.78E-07 dispersed
Car07g00735 Car-Chr7:3795354 Car07g00737 Car-Chr7:3806444 6.81E-74 proximal
Car04g02854 Car-Chr4:21628431 Car07g00735 Car-Chr7:3795354 1.30E-79 transposed
Car12g00467 Car-Chr12:2946970 Car07g00735 Car-Chr7:3795354 2.21E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g904 . . . . . . . . . . . Cma07g00748 . Car07g00735 . . . . . . . . . . . . . . . . . . . Cone6ag1353 . Lsi01g01045 . . . . . . Bda14g01210 . . . . . . Cmo07g00769 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009934 1 1 0 1 0 2 1 1 2 1 1 2 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88993 PF00069 Pkinase 3.20E-40 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00735 Car_Chr07 FPKM 12.199384 13.860908 4.290815 5.215286 12.287718 11.283213 11.972166 4.132582 3.578787 3.267013