Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00737 ATGCTTCTAGCAGAGTTCATGTTAATTCTTGCTTGCTTTTTCGCCATTCATGGCGGCGCCGACAGCGCAGCCTTTCCATGTCCTGTCGATTCTCCACGTTCTTGTAGCACTTACGTCTCGTACTTCGCAAAATCTCCAGAGTTTTTGGATCTCGTGAGCATATCGAGCTTGTTTGGAGTCAGTGCTTTGAAGATTGCCAAAGCAAGTAACTTGGGATCTGAGACAGCTCCATTGTTTGATGGGCAGATTCTACTGGTGCCTGTGGACTGTCACTGCTCTGAAAATGGCTTCTTCCACAATGTTACCTACAAAATCAAGAAAGATGACACCTTTTTCCACGTCTCGACCACCACGTTTGAGAATCTCTGCGGATGGAACATGGTGCAGAAAATGAACCCAAATCTAAATCCAACGAAATTGCAGGTGGGGGCAGAGGTGGTTTTTCCTCTGTTTTGCAAGTGCCCTTCTGAGAAAAACTTGAAACAGGGGATTCAATATCTTATTACTTATGTATGGCAACCCAACGATGAGGTTTCTCGTGTTAGTGCCATTTTTAATGTCTCAGAAGAAGCAATAAACGTGACGGATTTCACCGCGGGAAAGCCCATTTATGTCCCTGTTTCGAAACTTCCTCTGTTTTCTCGGTCTTGGCCTCAGAGGAAAAATATCAAACACCTTGTGATTATAATTGTGGCTTTGGGGATTAGTTTCCTGTTGGGATCATTGTTGGGTGTTTATATTTGGTTAATCCACAAGAAAAAAACATTACCCATCTGGGAAATTTCCATTTTTGGAATCTCTAAGCTCACAAAAAAGAAGATGACAAAACAGAGCAGGCAGCTGCAGGTTCTTCCTCCGGTGGTTTCCGACTACTTGGGAAGGCCGATTTTTTACGAATTTGAAGTGATAACAGAGGCGACGATGAACTTCAACGAGGGGTTTAAGATTGGGAAATCATTATACAGAGCCGAAATCAATGGAGAAATCTCAGTGGTAAAGGAAGCGAAACAGGATTCAAAGGAAGAGCTAATGATTCTGCAGAAAGTTAATCATATAAGTTTAGTGAAACTGGTGGGATTCTCTTCAGATTATGAGGAGAATTTTTACTTAGTTTATGAATTTGCTGAAAATGGGTCGTTGGATAAATGGCTTCATTCGCCATCTCCAGTTTCTTCAGGCTCTGTGAGCTTCCATCTCACATGGAGCCAACGGCTGAACATAGCTTTGGATGTGGCTAATGGGTTGCAGTATATGCACGATCACACTCAGCCAAGCATAGTTCATAGGGATATCAAAACGGGTTGCATCCTTCTTGACTCGAGATTCAGAGCAAAGATTTCAAATCTAGCCAAGGCCAGGCCTGCCACTGGTCCTCTGTCCACAAAAGTTGATATTTTGGCTTTTGGGGTTGTGATTTTGGAGCTGCTTTCTGGGAAAAAAGAAGTGAAGTTATGTGAAGAGATAAGGGAGGTTTTAGAACAAGAACAGAGCAGAGAAGAGAAGTTAAGAGATTGGATGGACCCAAAATTACAGAGCTTTTACCCAATTGAAGGAGCTTTGAGCTTGGCTCTAATGGCGAGGGCTTGTACACAAGAAGAACCTTTGTCCAGACCAACAATGGCTGAAATCGTCTTCAATCTCTGTGTTCTTGCTGAATCTCCCATTGAAAAGGCAGAAAAAACATGGGTTTCTCTTTTGGAGGCGGATGAAATCGCCGGTAGCCATGGCGTCATTAGAGCTCGTTGA 1746 43.13 MLLAEFMLILACFFAIHGGADSAAFPCPVDSPRSCSTYVSYFAKSPEFLDLVSISSLFGVSALKIAKASNLGSETAPLFDGQILLVPVDCHCSENGFFHNVTYKIKKDDTFFHVSTTTFENLCGWNMVQKMNPNLNPTKLQVGAEVVFPLFCKCPSEKNLKQGIQYLITYVWQPNDEVSRVSAIFNVSEEAINVTDFTAGKPIYVPVSKLPLFSRSWPQRKNIKHLVIIIVALGISFLLGSLLGVYIWLIHKKKTLPIWEISIFGISKLTKKKMTKQSRQLQVLPPVVSDYLGRPIFYEFEVITEATMNFNEGFKIGKSLYRAEINGEISVVKEAKQDSKEELMILQKVNHISLVKLVGFSSDYEENFYLVYEFAENGSLDKWLHSPSPVSSGSVSFHLTWSQRLNIALDVANGLQYMHDHTQPSIVHRDIKTGCILLDSRFRAKISNLAKARPATGPLSTKVDILAFGVVILELLSGKKEVKLCEEIREVLEQEQSREEKLRDWMDPKLQSFYPIEGALSLALMARACTQEEPLSRPTMAEIVFNLCVLAESPIEKAEKTWVSLLEADEIAGSHGVIRAR 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3806444 3808189 + Carg05259-RA Car07g00737 151971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00737 581 Pfam Protein tyrosine and serine/threonine kinase 333 449 IPR001245 GO:0004672|GO:0006468
Car07g00737 581 ProSiteProfiles Protein kinase domain profile. 286 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00737 - - - mcha:111005386 798.505
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00380 Car-Chr2:2847265 Car07g00737 Car-Chr7:3806444 2.80E-179 dispersed
Car06g01170 Car-Chr6:8612044 Car07g00737 Car-Chr7:3806444 4.64E-105 dispersed
Car07g00737 Car-Chr7:3806444 Car14g01593 Car-Chr14:12919959 2.31E-102 dispersed
Car07g00735 Car-Chr7:3795354 Car07g00737 Car-Chr7:3806444 6.81E-74 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g905 . . Bda04g00317 . . . Bma09g00351 . . . . Cma07g00750 . Car07g00737 . . . . . . . . . . . . . . . . . . . Cone6ag1352 . Lsi01g01049 . . . . . . . . . . . . . Cmo07g00772 . . . . . . . . . . . . . . . . . . . . . . Chy02g00965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002802 1 2 1 0 0 1 2 2 2 2 2 1 2 2 2 2 1 2 2 1 2 2 1 1 0 2 2 1 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88994 PF07714 PK_Tyr_Ser-Thr 4.90E-17 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00737 Car_Chr07 FPKM 1.57111 2.151951 2.164823 2.188558 5.873026 4.846521 5.512434 1.539791 1.394034 1.579672