Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00739 ATGGCGAGCGAGTTTGGAGAATCAACAAGCGTGCCAAATCAAAACCCCTCTTCGTCCAGTAACAATGATATTGGCGATTTCGAATGCAATATTTGTTTCGAGTTAGCTCAAGATCCAATTATCACTCTCTGTGGCCATCTCTTTTGCTGGCCTTGTTTGTATAGATGGCTGCATTATCACTCACAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTATTGAGCAGGAGAAATTGATCCCTCTTTATGGTAGGGGAAAGGTACCATCTGACCCGAGATTGAAGAGATATTCTGGTATGGATGTTCCGAGTCGCCCTGCTGGTCAAAGGCCTCAAACAGCACCTCCCCCTGTTGCTAATGACTTCGCAAACTATGGGTTTGGATTCACTGGTGGCTTTATGCCAATGTCAACAGCAAGGATTGGCAACTTCACCTTGGCGACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAATATCCAGTTTCATGGATTTCCTGATGCTACAGTTTATGGGACTACTTCTGGTTACCCCCCCTATGCATTCAACACATTCCATGGGGGTCATGGCCACCATTTTCAGCAACCGACGAGTCAAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTGATTCTTGCCTTGCTTTGGTGGTAG 675 45.19 MASEFGESTSVPNQNPSSSSNNDIGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHYHSQCQECPVCKALIEQEKLIPLYGRGKVPSDPRLKRYSGMDVPSRPAGQRPQTAPPPVANDFANYGFGFTGGFMPMSTARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPPYAFNTFHGGHGHHFQQPTSQGQHADNVLKNLLLLVGVFVILALLWW 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3812415 3813089 - Carg05261-RA Car07g00739 151973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00739 224 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 223 - -
Car07g00739 224 SUPERFAMILY RING/U-box 25 82 - -
Car07g00739 224 Pfam Zinc finger, C3HC4 type (RING finger) 27 74 - -
Car07g00739 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 223 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car07g00739 224 MobiDBLite consensus disorder prediction 1 20 - -
Car07g00739 224 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Car07g00739 224 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Car07g00739 224 SMART ring_2 29 69 IPR001841 -
Car07g00739 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 99 IPR013083 -
Car07g00739 224 CDD RING-HC_AtRMA_like 27 71 - -
Car07g00739 224 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00739 Car-Chr7:3812415 Car12g00466 Car-Chr12:2941124 2.07E-66 dispersed
Car03g00926 Car-Chr3:7272959 Car07g00739 Car-Chr7:3812415 9.15E-135 wgd
Car05g00180 Car-Chr5:958231 Car07g00739 Car-Chr7:3812415 2.96E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00739 K10666 - csv:101205026 397.512