Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00742 ATGCAGCTGGGGCTCCTTTTTTTAGGAGATATGATTAAGCTGTTTAAAGTCAAGGAGAAGCAGAGAGAACTTGCTGAAAATGCTAGTAATGGGGTACCTATAAAGAAGCAAAGTGCTGGAGAACTACGACTTCACAAAGATATTAGTGAGCTGAATCTACCAAAATCATGTAACATAACCTTTCCCAATGGCAAGGATGACCTGATGAACTTTGAAGTGTCAATACGACCAGATGAGGGATATTATTTAGGAGGCACATTTTTGTTCTCCTTTGCAGTTTCCCCCATCTATCCGCATGAAGCCCCGAAGGTCAAGTGCAGGACAAAGGTCTACCATCCAAACATCGACTTGGAAGGAAACGTCTGCCTCAACATCTTACGAGAAGATTGGAAACCTGTTCTCAATATTAACACTGTTATTTATGGACTCTACCATCTGTTCACGGAACCAAACGATGAGGATCCTCTGAATCATGATGCTGCTGCAGTTTTAAGAGACAATCCGAAGTTATTCGAATCTAATGTGAGAAGGGCTATGGCTGGGGGTTACGTGGGGCCAACCTTTTTCCCACGCTGTATGTAA 582 42.78 MQLGLLFLGDMIKLFKVKEKQRELAENASNGVPIKKQSAGELRLHKDISELNLPKSCNITFPNGKDDLMNFEVSIRPDEGYYLGGTFLFSFAVSPIYPHEAPKVKCRTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNDEDPLNHDAAAVLRDNPKLFESNVRRAMAGGYVGPTFFPRCM 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3824383 3827700 + Carg05264-RA Car07g00742 151976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00742 193 Pfam Ubiquitin-conjugating enzyme 43 178 IPR000608 -
Car07g00742 193 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 39 184 IPR000608 -
Car07g00742 193 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 111 126 IPR023313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00742 K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M [EC:2.3.2.34] - csv:101205966 373.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00742 Car-Chr7:3824383 Car11g01061 Car-Chr11:8189990 1.07E-120 dispersed
Car19g00493 Car-Chr19:6535628 Car07g00742 Car-Chr7:3824383 9.29E-120 wgd
Car03g00929 Car-Chr3:7282168 Car07g00742 Car-Chr7:3824383 1.03E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g922 . . Bda04g00324 Bda10g00313 . . . . . . . Cma07g00755 . Car07g00742 . . . . . . . . . . . . . . . . . . . . . Lsi01g01055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g00976 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001287 3 4 1 2 2 2 4 2 2 2 2 2 4 1 2 3 2 4 4 2 2 2 2 2 2 1 2 4 6 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00742 Car_Chr07 FPKM 8.51471 7.825275 11.592144 10.694637 9.078046 10.194001 9.992643 13.05484 11.665887 11.818102