Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00778 ATGGCAATCCCCACGTCTCTCTTTCCCTGTTTGTCTTTCGACTCCATGTTCAGTTCTGCTTCTTGTTCTTCCTCGTCGTTATCCTTGCAATCTCTTAGTCCCTTCAAGCCCCATTGCCATGGTTTAAAGATGAACACTCCCACCTCTAATGGGTCACTCGTTGTTAACTGTTCCGCTCGCGAAATGGGTTCCAGCTCTGACCCTTTGAACGGGAGCATTAAGCATCAGATATCATCTATGGCTCCCAATGGGATGATATTAAATGAAGCTTCAATGTCCATGCCATCGTATAAATGGCGACGAGTATTGCTCAAAGTAAGCGGCGAAGCACTTGCTGGTGATGGATTGCAGAATATTGATCCAAAGGTTACCATGGCAATAGCGAGGGAGGTTGCAGCTGTAACCCGTCTAGGCATCGAGGTTGCTATAGTAGTTGGTGGGGGTAACATTTTCCGTGGATCTTCGTGGGCTGGAAGTAGTGGTTTGGACCGTTCTTCTGCTGATTACATTGGGATGTTGGCAACAGTAATGAATGCGATATTTCTTCAAGCGACAATGGAGAGTATCGGTATTCCTACACGAGTGCAGACTGCGTTTCGAATGTCGGAGGTCGCGGAGCCATATATTCGACGAAGGGCTGTCAGGCACTTGGAAAAAGGAAGGGTTGTGATCTTTGCAGCTGGTACAGGCAATCCCTTTTTCACTACAGACACTGCAGCAGCCCTCCGTTGTGCAGAAATTAACGCTGAAGTTCTGCTGAAAGCGACAAATGTCGATGGAGTTTACGACGATGATCCAAGGCGAAACCCGAAGGCACATCTGCTAGAAACTCTTACGTACCACGAGGTGACTTCGAAGGACCTTTCGGTGATGGACATGACTGCCATTACACTATGCCAGGAAAATAACATTCCTGTTGTTGTCTTCAATCTAACGAAACCCGGTAACATATCGAAAGCCATAAAGGGCGAGAGAGTCGGGACATTGATTGGAGGAAAACGAAACTCAATGGTAGTAAGTACATGA 1026 46.98 MAIPTSLFPCLSFDSMFSSASCSSSSLSLQSLSPFKPHCHGLKMNTPTSNGSLVVNCSAREMGSSSDPLNGSIKHQISSMAPNGMILNEASMSMPSYKWRRVLLKVSGEALAGDGLQNIDPKVTMAIAREVAAVTRLGIEVAIVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVLLKATNVDGVYDDDPRRNPKAHLLETLTYHEVTSKDLSVMDMTAITLCQENNIPVVVFNLTKPGNISKAIKGERVGTLIGGKRNSMVVST 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4072649 4076746 + Carg05300-RA Car07g00778 152012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00778 341 Pfam Amino acid kinase family 101 310 IPR001048 -
Car07g00778 341 Hamap Uridylate kinase [pyrH]. 97 331 IPR015963 GO:0005737|GO:0006221|GO:0033862
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00778 K09903 pyrH; uridylate kinase [EC:2.7.4.22] - csv:101221565 556.599
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00976 Car07g00778 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02825 Car-Chr4:21521507 Car07g00778 Car-Chr7:4072649 3.81E-06 dispersed
Car06g00373 Car-Chr6:2053755 Car07g00778 Car-Chr7:4072649 4.55E-99 dispersed
Car07g00778 Car-Chr7:4072649 Car14g00238 Car-Chr14:1112027 1.74E-78 dispersed
Car15g00117 Car-Chr15:670517 Car07g00778 Car-Chr7:4072649 9.49E-07 dispersed
Car03g00976 Car-Chr3:7547128 Car07g00778 Car-Chr7:4072649 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1268 . . . . . Bpe13g00023 . . . . . Cma07g00792 Car03g00976 Car07g00778 Sed10g0495 Cpe19g00537 Cpe10g00345 Bhi03g01373 Tan03g1322 Cmetu08g1743 . Hepe04g1121 . . Cla01g01525 Cam01g1595 Cec04g1239 Cco04g1309 Clacu01g1619 Cmu01g1505 Cre04g1184 . . Cone6ag1292 . Lsi01g01139 . . Cme08g01074 . . Bda11g01366 . . . . Bma06g00506 . . Cmo07g00815 . . . . . . . . . . . . . . . . . . . . . Csa06g02792 Chy02g01043 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007541 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00778 Car_Chr07 FPKM 0.0 0.167771 0.151611 0.170109 0.272181 0.471686 0.375735 1.706373 1.660276 1.996016