Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00803 ATGAACTTATCAAGGAGAATCTGCATGAAACTCCCACTTACGGAGGCTGGGTGGAAGCAAAAGGGCCTAGATACTGCCCTTCAATTGAAGATAAGAACCATTCTCCGAGTTGAACTTAAGATTGTGAGGTTTCAAGACAAAGAGTCTCATCAGATTTTTCTTGAGCCAGAGGGCCGGAATGTGCCTGAGCTTTATGTGCAGGGATTTTCGACAGGCTTGCCAGAACGACTACAGTTGCCACTTTTGAGAACTTTACCAGGCCTTGAGAACTGTTCAATGCTTCGACCTGCATATGCTGTAGAGTATGATTTCTTGCCCGCTCATCAATGTAGCAGATCTCTTATGACAAAAAAAGTTGATGGACTTTTCTTCTCTGGTCAAATAAATGGAACCACAGGCTACGAAGAAGCAGCTGCACAAGGAATTATATCTGGTATCAATGCTGCCAGATTTTCAGATGGCAAGTCCCTCATTGTTCTTGAGAGGGAAAGTAGTTATATCGGGACCTTAATCGATGACCTAGTCACAAAAGACCTTCGTGAGCCTTATCGTATGTTGACAAGCCGCTCAGAACATCGCTTACTTCTCCGATCCGACAATGCGGATAGCCGTCTCACACCTCTTGGCCGTGAAATTGGGTTAATAGATGATAGGCGCTGGAAACTATACCAAGAGAAGCAAGCTAGAATATCTGATGAGAAGAAGAGATTGAAAACTGTCAGGATATCAGGAGGAGAGCTGGCTGCTGATATTTCCCGCCAGTCCGGTCAGCCCGTGAAGGACTATTCGACATTGGAGAGTCTTCTTAAAAAACCGCACATAGGATATAATGTTTTCGATAAGCATGGTTTTGGGAATAAGCTCTTGACCAAATCTGAAAAGGATTGTGTAGAGATTGATATCAAATATGAGGGTTTCATTTTACGGCAGCAAACACAACTCCAGCAGATGGTTCATCAACAACATAGAGTACTTCCTGAAGACTTGGATTACTATGCCATGACAACATTGTCCCTCGAGGCCCGTGAGAAACTATCTAAGGTGAGGCCACAAACCATCGGTCAAGCAAGTAGAGTTGGCGGGGTAAGTCCTGCTGATATCACTGCTCTCCTTATCATCCTTGAATCCAATAGAAGGAAAGCTCAGGAAATGAGGCGGCATCAGATGCTCGGTTCTATCATCAGAGAATCTACCGATACAGAAGAACGCCCATCTGGAGCGAATTTAACTGAGGCAATCAGTTCATGA 1248 44.31 MNLSRRICMKLPLTEAGWKQKGLDTALQLKIRTILRVELKIVRFQDKESHQIFLEPEGRNVPELYVQGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDFLPAHQCSRSLMTKKVDGLFFSGQINGTTGYEEAAAQGIISGINAARFSDGKSLIVLERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKLYQEKQARISDEKKRLKTVRISGGELAADISRQSGQPVKDYSTLESLLKKPHIGYNVFDKHGFGNKLLTKSEKDCVEIDIKYEGFILRQQTQLQQMVHQQHRVLPEDLDYYAMTTLSLEAREKLSKVRPQTIGQASRVGGVSPADITALLIILESNRRKAQEMRRHQMLGSIIRESTDTEERPSGANLTEAISS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4245847 4250145 - Carg05327-RA Car07g00803 152037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00803 415 Pfam Glucose inhibited division protein A 36 155 IPR040131 -
Car07g00803 415 Pfam tRNA modifying enzyme MnmG/GidA C-terminal domain 159 371 IPR026904 -
Car07g00803 415 MobiDBLite consensus disorder prediction 395 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00803 K03495 gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme - csv:101219572 697.582
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1333 . . Bda04g00384 . . . Bma09g00435 . . . . Cma07g00816 . Car07g00803 . Cpe19g00508 . . . . . . . . Cla01g01487 Cam01g1554 Cec04g1200 Cco04g1268 Clacu01g1580 Cmu01g1469 Cre04g1150 . . Cone6ag1261 . Lsi01g01174 . . Cme08g01141 . . . . . . . . . . Cmo07g00845 . . . . . . . . . . . . . . . . . . . . . Csa06g02736 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008582 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00803 Car_Chr07 FPKM 7.58427 7.605534 8.07298 8.319394 5.078149 5.345222 5.730924 10.822721 10.795952 11.34483