Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00808 ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGATACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGTCCAATCGCCGACCTCCGGGATTCAGAACAACGTCAATCTCTCGCCGCCGCCGCCGCCGCGGCTGGCGGAGGAGGATGCCGTAGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCCGATTGCGGCCATTTGTTCCACCTCAAGTGTGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGGTTTGCCGGACCTCGCCCATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCTAGATAG 519 53.95 MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAR 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4281919 4282437 - Carg05332-RA Car07g00808 152042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00808 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 156 IPR013083 -
Car07g00808 172 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Car07g00808 172 Pfam Ring finger domain 110 152 IPR001841 -
Car07g00808 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 171 IPR045899 -
Car07g00808 172 SUPERFAMILY RING/U-box 86 157 - -
Car07g00808 172 SMART ring_2 110 151 IPR001841 -
Car07g00808 172 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 5 171 - -
Car07g00808 172 CDD RING-H2_PA-TM-RING 109 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00808 Car-Chr7:4281919 Car14g01871 Car-Chr14:14481486 2.98E-29 dispersed
Car14g00339 Car-Chr14:1655459 Car07g00808 Car-Chr7:4281919 2.90E-45 wgd
Car03g01008 Car-Chr3:8393614 Car07g00808 Car-Chr7:4281919 7.29E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00808 - - cpep:111782200 290.041