Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00878 ATGCCGATCCGTAACATTGCCATTGGAAGGCCCGAGGAGGCTACCCGACCCGATGCTTTGAAGGCCGGGTTGGCTGAGTTCATTTCTACGTTGATTTTTGTTTTTGCCGGCCAGGGTTCCGGTATAGCCTTTGGTAAGCTTACTGACGGTGGTGCTGCCACGCCCGCCGGCCTTATCTCCGCCTCCATCGCCCATGCCTTCGCTCTTTTTGTCGCCGTCTCCGTCGGCGCCAACATCTCCGGCGGCCACGTCAACCCTGCTGTTACCTTTGGCGCCTTCGTTGGTGGCAACATCACCCTCCTACGTGGCATCATCTACTGGATCGCCCAGCTCCTCGGATCCGTCGTCGCTTGCTTGCTCCTTAAGTTCGTCACCGGCTTGCCCACGGGCAGCTTTGCTCTGTCTGCTGGAGTTGGGGAAGTAAACGCCTTCGTTTTTGAGATAGTGATGACATTTGGATTGGTGTACACGGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCACCGATCGCCATCGGTTTCATCGTCGGAGCCAACATTTTGGCCGGTGGAGCCTTCACCGGAGCGTCGATGAACCCTGCCGTAGCATTCGGACCGTCGGTGGTGAGCTGGTCATGGGACAACCACTGGGTCTACTGGGCCGGGCCTCTGGTCGGAGGTGGACTTGCTGGGCTCATCTACGAGTTCATCTTCATTTCCAACACCCACGAGCAGTTGCCAGTCACCGAGTACTGA 753 57.5 MPIRNIAIGRPEEATRPDALKAGLAEFISTLIFVFAGQGSGIAFGKLTDGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGEVNAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDNHWVYWAGPLVGGGLAGLIYEFIFISNTHEQLPVTEY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4717731 4719441 + Carg25566-RA Car07g00878 152112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00878 250 Gene3D Glycerol uptake facilitator protein. 4 249 IPR023271 -
Car07g00878 250 PANTHER AQUAPORIN-8 1 246 IPR034294 -
Car07g00878 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car07g00878 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car07g00878 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car07g00878 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car07g00878 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car07g00878 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car07g00878 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Car07g00878 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car07g00878 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car07g00878 250 SUPERFAMILY Aquaporin-like 13 244 IPR023271 -
Car07g00878 250 PANTHER AQUAPORIN TIP1-1 1 246 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car07g00878 Car14g00213 CCT
Car03g01082 Car07g00878 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00878 Car-Chr7:4717731 Car13g00787 Car-Chr13:8691917 1.62E-103 dispersed
Car02g01297 Car-Chr2:8646989 Car07g00878 Car-Chr7:4717731 1.53E-102 transposed
Car14g00213 Car-Chr14:1009026 Car07g00878 Car-Chr7:4717731 3.23E-127 wgd
Car03g01082 Car-Chr3:8799843 Car07g00878 Car-Chr7:4717731 1.47E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00878 K09873 - csv:101204225 469.929