Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00921 ATGTTGGATCTCAATCTCTGTATTCTCTCCGGAGATTCCGCCTCCGCCTCCGGTTCCGGTTCCGGTTCCGCCGATCATTCCAACACCACCGCCGACGAGGATTTCTCTTCCAACGTTAACTCTGGTTTCACTTTCTCTTTCAGTATCCTCAACAACAACGGCACCGATAATCAACTTGACCGGACGGCCCTGTTTCACCCCGTCGCCGGCGTCTGTTCGCAGAGGAAATGGCTGGATCAGTCTGTTAATCCGGTGAAGAAGGGACGGCGAGGCCCCAAATCAAGAAGCTCTCAGTATCGTGGGGTTACTTGTTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGGATAACGGGAAGCAAGTCTATTTGGGCGGTTTTGACACGGCCCATTCTGCAGCGAGGGCTTACGATCGAGCGGCAATCAAGTTTCGAGGAGTTCATGCGGATATTAACTTCGATATCGGGGACTACAGAGAGGAGATTAAAGAGATGAGGAATTTGAGTAAAGAGGAGTTTGTGCACATTCTTCGACGGCAGAGCAATGGGTTTTCGCGAGGGAGTTCCAAATACAGAGGGGTTACTCTCCATAAGTGTGGCCGATGGGAGGCTCGTATGGGCCAGTTTTTAGGGAAGAAGTATGTGTACCTTGGGCTGTTTGATAGTGAGGTAGAAGCAGCAAGAGCATATGATAAGGCAGCCATAAAACACAACGGAAGGGAAGCTGTAACCAATTTTGATCAGAGCTGTTATTATGGCATGGAGATTGCCTTTGAATCTGAAAGCCATGGCGATATTGACCTGAGCTTGGGCATTGCTCCTCCATGTCCACCCCAACACCAAACCGATAACCGGAGTTGGCCGATCCCAACCCCCTACGGCGGAGCATCCTCACTCCCGGTAAAAAATGTGGAGTTTTACCATAGTTTATGTTCTGCCAAACCAGCTGATGTTGGTCAAACCATTGAAGACTAA 975 49.74 MLDLNLCILSGDSASASGSGSGSADHSNTTADEDFSSNVNSGFTFSFSILNNNGTDNQLDRTALFHPVAGVCSQRKWLDQSVNPVKKGRRGPKSRSSQYRGVTCYRRTGRWESHIWDNGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFDIGDYREEIKEMRNLSKEEFVHILRRQSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEVEAARAYDKAAIKHNGREAVTNFDQSCYYGMEIAFESESHGDIDLSLGIAPPCPPQHQTDNRSWPIPTPYGGASSLPVKNVEFYHSLCSAKPADVGQTIED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5119172 5122481 - Carg25800-RA Car07g00921 152155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00921 324 Pfam AP2 domain 189 237 IPR001471 GO:0003700|GO:0006355
Car07g00921 324 Pfam AP2 domain 98 146 IPR001471 GO:0003700|GO:0006355
Car07g00921 324 ProSiteProfiles AP2/ERF domain profile. 98 154 IPR001471 GO:0003700|GO:0006355
Car07g00921 324 ProSiteProfiles AP2/ERF domain profile. 190 247 IPR001471 GO:0003700|GO:0006355
Car07g00921 324 MobiDBLite consensus disorder prediction 13 33 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00873 Car-Chr3:6972936 Car07g00921 Car-Chr7:5119172 5.49E-10 dispersed
Car04g01331 Car-Chr4:7718546 Car07g00921 Car-Chr7:5119172 1.09E-09 dispersed
Car07g00921 Car-Chr7:5119172 Car14g00972 Car-Chr14:6919663 8.57E-91 dispersed
Car14g00161 Car-Chr14:752508 Car07g00921 Car-Chr7:5119172 2.23E-106 wgd
Car02g00621 Car-Chr2:4684407 Car07g00921 Car-Chr7:5119172 4.45E-111 wgd
Car04g00244 Car-Chr4:1361453 Car07g00921 Car-Chr7:5119172 1.12E-27 wgd
Car06g00295 Car-Chr6:1651111 Car07g00921 Car-Chr7:5119172 2.89E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3890 PF00847 AP2 1.40E-09 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00921 K09284 - csv:101211008 420.624