Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00960 ATGAGCGTGAACATAACCTCCATTAAAACCGCCTCCAACGGCGTCTGGCAAGGCGACAATCCACTCAATTTCGCCTTCCCTCTTTTGATCCTTCAATCCGTTTTGATTCTCCTCCTCACCCGCCTCCTCGCCGCCGTCCTCAAGCCCCTCCGCCAGCCCAAAGTCATCGCCGAAATCCTCGGCGGGATTCTTCTGGGTCCCTCTGTTTTTGGTCGGAATCAAGTTTATTTGAACTGGGTTTTTCCGGATTGGAGTACTCCGATTCTTGAATCGGTTGCTAGTATTGGGTTGTTGTTCTTTTTGTTTTTGGTTGGATTGGAACTCGATTTGTCCTCTGTTCGCCGTAGTGGGCGGCGGGCTTTTGGAATCGCCGTCGCTGGAATCTCCGTTCCTTTCCTCTCCGGCACCGGCATCGCCTTTGTACTTCGGAAAACCGTCGCCGGTGCCAATAACGTCGGGTACTGGCAATTTGTTGTGTTCATCGGCGTTGCTCTGTCCATTACTGCTTTTCCTGTTCTGACGCGCATTTTAGCGGAGCTTAAGCTTCTCACCACCGAAGTCGGCGAGATTGCCATGGCGGCCGCCGCATTCAACGACATGGCTGCTTGGATTCTCCTCGCACTCGCCATTGCTCTAACGGGCAACGACAACTCTGTTACAGTACAGAGAAGTTCGTTAGTTTCCGTGTGGGTCCTACTCTCTGGAGCTGGATTTGTCGTTTTCATGATGACGGTGGTCCGACCAGGAATGAAGTGGGTTGCACGGCGGTGTTCGTACGAGGATGACGCTGTGGAGGAAGGGTATGTCTGTTTGACGTTGATCGGAGTGTTGGTTTGTGGGTTTGTAACGGATTTGATCGGAATTCATTCGATTTTTGGGGGTTTTGTGTTTGGATTGACGGTAGCGAAGGAGGGGAGATTCGCGGAGAGATTGATTGAGAGGATTGAGGATTTCGTGTCGGGGCTTCTTCTTCCCCTGTATTTTGCGTCGAGTGGGTTGAAGACGAATGTGACGAAGATCAACGGCGGAAAATCATGGGGGCTGCTGGCGCTGGTTATTTCCACGGCGTGTGCAGGGAAGATTCTGGCGACGTTTGCGGCGGCGATGGCGTTTTTAATGCCGGCGAGGGAGGCGATGGCTTTGGGATTGCTTATGAACACTAAAGGCTTGGTGGAACTCATCGTGCTCAATATTGGGAAGGAGAAAAAGGTTTTGAACGACGAAGTATTCGCGATACTAGTGTTAATGGCACTATTCACAACCTTCATCACCACCCCCACCGTGATGGCAGTCTACAAGCCAGCCCGCGCGGCGGCCGCCACCCGAACCCAGCGCAAACTCCGCCACCTCTCTGGCGCCGGGAACTCCACCAACGACAAGTCACTAACAATCCTAGCCTGCCTCCACAGCTTAGGCAACGTACCTGCCCTAATCAGCCTGACCGAGTCAACTCGCAGCACCAAAACCTCGTCCCTCAAACTCTTCGTCATGCACCTCGTCGAACTCACCGAGCGCTCCTCCTCAATCCTAATGGCCCAACGCGCCCGCAAGAACGGCTTCCCTTTCTTCGCAAGGTTCCGCAAGGCCAGCGAGTGGCACGACCAGATGGCCGCCGCCTTTCAGGCCTACAGCCAGCTGGGCCGGGTCAAGGTCCGGCCCACCACAGCGGTCTCTTCCTTAACCACAATGCACGAGGACATCTGCGGCGTGGCGGACGATAAGAGAGTGGCGATGATCATCTTGCCGTTTCATCGGAATTGGAGGACGGTCAGCGGCGTGGAGGAGAATATGGGCCATGGGTGGAGAGTTGTGAACCAGCGGGTGCTGAAGAGTGCGCCTTGCTCGGTGGCGGTTCTTGTGGACCGGGGGTTAGGAGCGGTGGTTGGTGCGGCACAGAGCATTTGTGTGATGTTTTTTGGTGGTCCTGATGACCGGGAGGCGCTGGAATTGGGTGGACGGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTGAGGTTTCGGGCGTCGCCGCCGTCGGATGTAGTGGAGGGTAGTAAGGTCATTTCGCGACATATGTATTCTAAATCTAGCGACAGTCATTATAGCTTCTCCACTGCTCCAATAAACTGGGAAAAAGAAAAGGAGCTAGATGAAGCAGCAATAGCAGAATTCAGAGCCAAATGGGATGCAACAGCTGAGTACACAGAAAAGGAAGCCACCACCGACACGAACACGATAGTTGAAGGGGTGGTCGGGATCGGAAAGGAAGGCGGTTTTGACCTAATCGTGGTCGGGAAGGGTCGGGTTCCGTCGAGCATGGTGGCAAAACTAGCAGACCGGGCGGCGGAGCACTCAGAGTTAGGGCCGATCGGGGACATATTGAGCAGCTCCGGCAGGGGAATAGTATCTTCAATTCTAGTAATTCAACAACACGAAGAAGAAGAAATTCCAGCATTGAATAAGCAGTCTTTCTCAATCATAGGAGCTTCCATTAATGTATAA 2484 53.74 MSVNITSIKTASNGVWQGDNPLNFAFPLLILQSVLILLLTRLLAAVLKPLRQPKVIAEILGGILLGPSVFGRNQVYLNWVFPDWSTPILESVASIGLLFFLFLVGLELDLSSVRRSGRRAFGIAVAGISVPFLSGTGIAFVLRKTVAGANNVGYWQFVVFIGVALSITAFPVLTRILAELKLLTTEVGEIAMAAAAFNDMAAWILLALAIALTGNDNSVTVQRSSLVSVWVLLSGAGFVVFMMTVVRPGMKWVARRCSYEDDAVEEGYVCLTLIGVLVCGFVTDLIGIHSIFGGFVFGLTVAKEGRFAERLIERIEDFVSGLLLPLYFASSGLKTNVTKINGGKSWGLLALVISTACAGKILATFAAAMAFLMPAREAMALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARAAAATRTQRKLRHLSGAGNSTNDKSLTILACLHSLGNVPALISLTESTRSTKTSSLKLFVMHLVELTERSSSILMAQRARKNGFPFFARFRKASEWHDQMAAAFQAYSQLGRVKVRPTTAVSSLTTMHEDICGVADDKRVAMIILPFHRNWRTVSGVEENMGHGWRVVNQRVLKSAPCSVAVLVDRGLGAVVGAAQSICVMFFGGPDDREALELGGRMAEHPAVKVTVVRFRASPPSDVVEGSKVISRHMYSKSSDSHYSFSTAPINWEKEKELDEAAIAEFRAKWDATAEYTEKEATTDTNTIVEGVVGIGKEGGFDLIVVGKGRVPSSMVAKLADRAAEHSELGPIGDILSSSGRGIVSSILVIQQHEEEEIPALNKQSFSIIGASINV 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5432841 5436830 - Carg24361-RA Car07g00960 152194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00960 827 Pfam Sodium/hydrogen exchanger family 35 428 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00960 - - - csv:101207589 1180.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00960 Car-Chr7:5432841 Car16g00507 Car-Chr16:3242592 0 dispersed
Car03g00383 Car-Chr3:4611028 Car07g00960 Car-Chr7:5432841 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g701 . . . . . . . . . . . Cma07g00971 . Car07g00960 . Cpe10g00875 . Bhi03g01987 . . . Hepe04g0870 . . . . . . . . . . Cone10ag0300 . . Lsi01g01409 . . . . . . . . Bpe02g00838 . . . . Cmo07g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme08g02387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car20g00913 . 10 809 Antiporter Super Family AT2G13620 71.2 0.0e+00 1132.1
Car02g00450 . 10 790 Antiporter Super Family AT2G13620 71.1 0.0e+00 1111.3
Car03g00383 . 75 828 Antiporter Super Family AT3G53720 67.4 1.8e-278 955.7
Car07g00960 . 76 810 Antiporter Super Family AT3G53720 59.0 4.4e-232 801.6
Car16g00507 . 83 779 Antiporter Super Family AT3G53720 50.9 7.3e-187 651.4
Car04g00658 . 83 766 Antiporter Super Family AT3G53720 50.2 4.9e-183 638.6
Car16g00506 . 83 774 Antiporter Super Family AT3G53720 50.1 4.9e-183 638.6
Car16g00507 . 1 797 Antiporter Super Family AT5G41610 68.4 6.3e-306 1047.0
Car04g00658 . 1 766 Antiporter Super Family AT5G41610 67.2 1.6e-296 1015.8
Car16g00506 . 1 777 Antiporter Super Family AT5G41610 66.5 1.5e-294 1009.2
Car04g00657 . 1 694 Antiporter Super Family AT5G41610 66.3 2.3e-260 895.6
Car03g00383 . 8 818 Antiporter Super Family AT5G41610 51.2 1.4e-209 726.9
Car04g00658 . 1 766 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Car16g00506 . 11 796 Antiporter Super Family AT4G23700 64.3 3.9e-287 984.6
Car16g00507 . 1 779 Antiporter Super Family AT4G23700 63.8 3.3e-278 954.9
Car04g00657 . 1 692 Antiporter Super Family AT4G23700 62.3 2.3e-247 852.4
Car04g00658 . 4 766 Antiporter Super Family AT3G17630 63.8 5.7e-275 944.1
Car16g00507 . 5 779 Antiporter Super Family AT3G17630 63.9 1.9e-270 929.1
Car16g00506 . 812 1577 Antiporter Super Family AT3G17630 63.7 1.6e-269 926.0
Car04g00657 . 1 692 Antiporter Super Family AT3G17630 60.9 3.6e-229 792.0
Car03g00383 . 2 808 Antiporter Super Family AT3G17630 51.6 1.9e-206 716.5
Car16g00506 . 3 777 Antiporter Super Family AT1G64170 58.0 6.0e-240 827.8
Car04g00658 . 11 766 Antiporter Super Family AT1G64170 58.2 1.2e-235 813.5
Car16g00507 . 10 789 Antiporter Super Family AT1G64170 56.4 1.1e-230 797.0
Car04g00657 . 1 694 Antiporter Super Family AT1G64170 54.5 3.9e-199 692.2
Car20g00913 . 10 809 Antiporter Super Family AT2G13620 71.2 0.0e+00 1132.1
Car02g00450 . 10 790 Antiporter Super Family AT2G13620 71.1 0.0e+00 1111.3
Car16g00506 . 3 777 Antiporter Super Family AT1G64170 58.0 6.0e-240 827.8
Car04g00658 . 11 766 Antiporter Super Family AT1G64170 58.2 1.2e-235 813.5
Car16g00507 . 10 789 Antiporter Super Family AT1G64170 56.4 1.1e-230 797.0
Car04g00657 . 1 694 Antiporter Super Family AT1G64170 54.5 3.9e-199 692.2
Car04g00658 . 1 766 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Car16g00506 . 11 796 Antiporter Super Family AT4G23700 64.3 3.9e-287 984.6
Car16g00507 . 1 779 Antiporter Super Family AT4G23700 63.8 3.3e-278 954.9
Car04g00657 . 1 692 Antiporter Super Family AT4G23700 62.3 2.3e-247 852.4
Car16g00507 . 1 797 Antiporter Super Family AT5G41610 68.4 6.3e-306 1047.0
Car04g00658 . 1 766 Antiporter Super Family AT5G41610 67.2 1.6e-296 1015.8
Car16g00506 . 1 777 Antiporter Super Family AT5G41610 66.5 1.5e-294 1009.2
Car04g00657 . 1 694 Antiporter Super Family AT5G41610 66.3 2.3e-260 895.6
Car03g00383 . 8 818 Antiporter Super Family AT5G41610 51.2 1.4e-209 726.9
Car04g00658 . 4 766 Antiporter Super Family AT3G17630 63.8 5.7e-275 944.1
Car16g00507 . 5 779 Antiporter Super Family AT3G17630 63.9 1.9e-270 929.1
Car16g00506 . 812 1577 Antiporter Super Family AT3G17630 63.7 1.6e-269 926.0
Car04g00657 . 1 692 Antiporter Super Family AT3G17630 60.9 3.6e-229 792.0
Car03g00383 . 2 808 Antiporter Super Family AT3G17630 51.6 1.9e-206 716.5
Car03g00383 . 75 828 Antiporter Super Family AT3G53720 67.4 1.8e-278 955.7
Car07g00960 . 76 810 Antiporter Super Family AT3G53720 59.0 4.4e-232 801.6
Car16g00507 . 83 779 Antiporter Super Family AT3G53720 50.9 7.3e-187 651.4
Car04g00658 . 83 766 Antiporter Super Family AT3G53720 50.2 4.9e-183 638.6
Car16g00506 . 83 774 Antiporter Super Family AT3G53720 50.1 4.9e-183 638.6
Car17g00919 . 47 790 Antiporter Super Family AT3G52080 54.1 9.2e-233 803.9
Car08g00430 . 47 772 Antiporter Super Family AT3G52080 53.7 1.5e-227 786.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g00960 Car_Chr07 FPKM 4.361829 5.801033 2.199537 2.369384 5.118814 4.487625 4.833953 6.549476 4.871999 5.129463