Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00972 ATGGCCGAGAACGAGGACATTCAGCCTCTCGTCTGCGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCCGTCTTCCCTAGCATTGTTGGTCGCCCCCGCCATACAGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCACGGAATTGTTAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCCGAAGAACATCCAGTTCTCCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTACGCCAGTGGTCGTACAACCGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGCCGTGACCTGACTGATGCCCTCATGAAAATTTTAACTGAGCGTGGTTATTCATTCACCACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCGTACATTGCCCTTGACTATGAGCAAGAATTGGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTACGAGTTACCTGATGGTCAGGTGATCACCATCGGCAACGAGCGTTTCCGATGCCCAGAAGTGCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCTGGTATTCATGAAACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAGATCTCTGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCACCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCGAAGGCTGAGTATGACGAGTCCGGTCCTTCAATTGTCCACAGGAAGTGCTTCTAA 1134 48.15 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGNERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 5517379 5519250 + Carg13210-RA Car07g00972 152206
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car07g00972 377 Pfam Actin 5 377 IPR004000 -
Car07g00972 377 Gene3D - 140 340 - -
Car07g00972 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Car07g00972 377 PRINTS Actin signature 28 37 IPR004000 -
Car07g00972 377 PRINTS Actin signature 51 62 IPR004000 -
Car07g00972 377 PRINTS Actin signature 63 85 IPR004000 -
Car07g00972 377 PRINTS Actin signature 117 130 IPR004000 -
Car07g00972 377 PRINTS Actin signature 142 161 IPR004000 -
Car07g00972 377 PRINTS Actin signature 238 254 IPR004000 -
Car07g00972 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Car07g00972 377 PANTHER ACTIN-97 1 376 - -
Car07g00972 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Car07g00972 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Car07g00972 377 SMART actin_3 7 377 IPR004000 -
Car07g00972 377 PANTHER ACTIN 1 376 IPR004000 -
Car07g00972 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Car07g00972 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Car07g00972 377 Gene3D - 10 371 - -
Car07g00972 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02871 Car-Chr4:21703768 Car07g00972 Car-Chr7:5517379 3.31E-79 dispersed
Car07g00972 Car-Chr7:5517379 Car14g00382 Car-Chr14:1917891 0 dispersed
Car16g00912 Car-Chr16:7472007 Car07g00972 Car-Chr7:5517379 4.38E-32 dispersed
Car05g01199 Car-Chr5:11350506 Car07g00972 Car-Chr7:5517379 1.26E-54 transposed
Car15g00367 Car-Chr15:1924229 Car07g00972 Car-Chr7:5517379 0 wgd
Car02g00582 Car-Chr2:4437827 Car07g00972 Car-Chr7:5517379 0 wgd
Car20g00354 Car-Chr20:1994621 Car07g00972 Car-Chr7:5517379 0 wgd
Car03g00375 Car-Chr3:4561210 Car07g00972 Car-Chr7:5517379 0 wgd
Car04g02545 Car-Chr4:20128173 Car07g00972 Car-Chr7:5517379 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00972 K10355 - csv:101214246 744.191