Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g00972 | ATGGCCGAGAACGAGGACATTCAGCCTCTCGTCTGCGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCCGTCTTCCCTAGCATTGTTGGTCGCCCCCGCCATACAGGTGTTATGGTTGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCACGGAATTGTTAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCCGAAGAACATCCAGTTCTCCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTACGCCAGTGGTCGTACAACCGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGCCGTGACCTGACTGATGCCCTCATGAAAATTTTAACTGAGCGTGGTTATTCATTCACCACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCGTACATTGCCCTTGACTATGAGCAAGAATTGGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTACGAGTTACCTGATGGTCAGGTGATCACCATCGGCAACGAGCGTTTCCGATGCCCAGAAGTGCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCTGGTATTCATGAAACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAGATCTCTGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCACCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCGAAGGCTGAGTATGACGAGTCCGGTCCTTCAATTGTCCACAGGAAGTGCTTCTAA | 1134 | 48.15 | MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGNERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5517379 | 5519250 | + | Carg13210-RA | Car07g00972 | 152206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g00972 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
| Car07g00972 | 377 | Gene3D | - | 140 | 340 | - | - | |
| Car07g00972 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
| Car07g00972 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Car07g00972 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Car07g00972 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Car07g00972 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
| Car07g00972 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Car07g00972 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
| Car07g00972 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Car07g00972 | 377 | PANTHER | ACTIN-97 | 1 | 376 | - | - | |
| Car07g00972 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Car07g00972 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
| Car07g00972 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
| Car07g00972 | 377 | PANTHER | ACTIN | 1 | 376 | IPR004000 | - | |
| Car07g00972 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
| Car07g00972 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
| Car07g00972 | 377 | Gene3D | - | 10 | 371 | - | - | |
| Car07g00972 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02871 | Car-Chr4:21703768 | Car07g00972 | Car-Chr7:5517379 | 3.31E-79 | dispersed | |
| Car07g00972 | Car-Chr7:5517379 | Car14g00382 | Car-Chr14:1917891 | 0 | dispersed | |
| Car16g00912 | Car-Chr16:7472007 | Car07g00972 | Car-Chr7:5517379 | 4.38E-32 | dispersed | |
| Car05g01199 | Car-Chr5:11350506 | Car07g00972 | Car-Chr7:5517379 | 1.26E-54 | transposed | |
| Car15g00367 | Car-Chr15:1924229 | Car07g00972 | Car-Chr7:5517379 | 0 | wgd | |
| Car02g00582 | Car-Chr2:4437827 | Car07g00972 | Car-Chr7:5517379 | 0 | wgd | |
| Car20g00354 | Car-Chr20:1994621 | Car07g00972 | Car-Chr7:5517379 | 0 | wgd | |
| Car03g00375 | Car-Chr3:4561210 | Car07g00972 | Car-Chr7:5517379 | 0 | wgd | |
| Car04g02545 | Car-Chr4:20128173 | Car07g00972 | Car-Chr7:5517379 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g00972 | K10355 | - | csv:101214246 | 744.191 |