Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01000 ATGGCGGAGGAGGGTTTTGAAGTGTACCATGTCCCACACCAGAGCTGCAGAGATAAGCTTCGTGTGGGAATTGCAAACAATAATCATAATTCCCACATCGCCGCTGCTTTGCTTCCTTTATGTCATCCTCCTTCTTTGATCTCCTCCCACTTTGATTCCCACCCACTTCCTCAAAATCCCTCTTTTCATTACCCTCCTCCTCCACCTCCTCCTCCCACCGCCGCCGATGTCCCCCCGCTCCTCCCTGACCAACCCTTGTCCCTTGACCTCAACCTCCAGCAGCGCTACGCCTCCGCCCTCCCTTTTGTTGGCTACTCCGCCTCCCTTTTGAAAGCCTCCAAATTCTTGAAGCCCGCTCAGCAGCTGCTTCACGACCTGTTTGACTCGCCGCCGGATCCCCTCCTCCTTGACCCTCTTCTTGAAAGCTTGGCCGGTGATATTCCTGATCCGATTACCTCTACCGACGACGACGGCGGCGCCGACAGCCGGAGGAAAAAATCCAGGCTTGTTACCATGCTGGACGAGGTATACAAAAGATATAAGCTTTACTATCAACAGATGCAAGCTGTGGTTACAACATTTGAATACGCTGCAGGGCTTGGCAATGCAGCGCCCTACATGAACTTGGCCGTAACAGCCATGTTTAAGCATTTCAAATTCTTAAAGAACACCATTGCCGACCAGCTCCAATTCAACAAGAAAAATCAGCAGCCTTACAACCCATATTGCCAAACATCCATTCACAACAACAATAATGCACCATTCGTCGACCACCAACCCGTTTGGCGACCTCAGAGAGGCCTCCCGGAGAGAGCTGTCACTGTCCTCCGAGCGTGGCTCTTCGAACACTTCCTTCATCCCTATCCTACTGACACGGATAAGCTCATGCTGGCTAGCCAAACTGGTCTCTCGCGAAGCCAGGTATCAAACTGGTTTATTAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATCCACATGCTAGAAACAAGGCAAGCTCGAAAATCTCATCAGAACAACGACGACAACGACAACAACAATGATCATATTTCAACCCACAATGGCAATAATAACAATGCATCTTCATCACATCACGATCACAACCAACTGAACTTGTCCAACTCCAATTTCATTCCGACCCACCACCCTCATGTGGCTGCAGGAGCCGCCCATATGGGCGGGGGCGCGGGCGGCGGAAACGTTTCCTTAACTCTGGGGCTTCACCAGAATTACGGCGGGATTACTCTCACGGAACCGTTTCCGATCAATGCAGCTCAGCATTTTAACTTTGGGTTAGAAGGCAATGGTGAAGGGTTTGTAAATGAGTGGTTTTAA 1341 50.34 MAEEGFEVYHVPHQSCRDKLRVGIANNNHNSHIAAALLPLCHPPSLISSHFDSHPLPQNPSFHYPPPPPPPPTAADVPPLLPDQPLSLDLNLQQRYASALPFVGYSASLLKASKFLKPAQQLLHDLFDSPPDPLLLDPLLESLAGDIPDPITSTDDDGGADSRRKKSRLVTMLDEVYKRYKLYYQQMQAVVTTFEYAAGLGNAAPYMNLAVTAMFKHFKFLKNTIADQLQFNKKNQQPYNPYCQTSIHNNNNAPFVDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLASQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQARKSHQNNDDNDNNNDHISTHNGNNNNASSSHHDHNQLNLSNSNFIPTHHPHVAAGAAHMGGGAGGGNVSLTLGLHQNYGGITLTEPFPINAAQHFNFGLEGNGEGFVNEWF 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5698858 5701032 - Carg13238-RA Car07g01000 152234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01000 446 MobiDBLite consensus disorder prediction 57 82 - -
Car07g01000 446 MobiDBLite consensus disorder prediction 59 79 - -
Car07g01000 446 Pfam Associated with HOX 160 226 IPR006563 -
Car07g01000 446 MobiDBLite consensus disorder prediction 351 382 - -
Car07g01000 446 Pfam Homeobox KN domain 279 318 IPR008422 GO:0003677|GO:0006355
Car07g01000 446 ProSiteProfiles 'Homeobox' domain profile. 259 322 IPR001356 GO:0003677
Car07g01000 446 MobiDBLite consensus disorder prediction 334 393 - -
Car07g01000 446 MobiDBLite consensus disorder prediction 334 350 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00239 Car07g01000 CCT
Car07g01000 Car14g00087 CCT
Car06g00239 Car07g01000 ECH
Car07g01000 Car14g00087 ECH
Car03g00349 Car07g01000 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01000 Car-Chr7:5698858 Car13g00181 Car-Chr13:2110060 7.04E-69 dispersed
Car14g00087 Car-Chr14:459051 Car07g01000 Car-Chr7:5698858 2.38E-103 wgd
Car03g00349 Car-Chr3:4418841 Car07g01000 Car-Chr7:5698858 3.78E-150 wgd
Car06g00239 Car-Chr6:1364836 Car07g01000 Car-Chr7:5698858 3.25E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3896 PF07526 POX 2.10E-24 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01000 - - cmos:111453568 493.812