Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g01016 | ATGGCGGCTTTGGAGACAGCCGGAGTTGATTTGGAGGAAGGGGGTCGTGGTGGTGACGGCGGACGGGGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGCCATTCTATTGTACAAAATGTAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTTAACAATGGGACACTATCGACAACCACGGTTGCAGCATCGGTGGCTGCTTCTCCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGAGTCCTGAATTTTCTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTTCATTTCAATATGCGGTCATAA | 492 | 47.76 | MAALETAGVDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHEFNNGTLSTTTVAASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5858833 | 5859881 | - | Carg13254-RA | Car07g01016 | 152250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g01016 | 163 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 29 | 95 | IPR011016 | GO:0008270 | |
| Car07g01016 | 163 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Car07g01016 | 163 | Pfam | RING-variant domain | 37 | 88 | IPR011016 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car07g01016 | Car14g00080 | CCT | |
| Car06g00229 | Car07g01016 | CCT | |
| Car07g01016 | Car14g00080 | ECH | |
| Car06g00229 | Car07g01016 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car07g01016 | Car-Chr7:5858833 | Car11g01588 | Car-Chr11:12584642 | 1.22E-19 | dispersed | |
| Car07g01215 | Car-Chr7:7423338 | Car07g01016 | Car-Chr7:5858833 | 3.06E-09 | dispersed | |
| Car15g01201 | Car-Chr15:9342011 | Car07g01016 | Car-Chr7:5858833 | 1.37E-11 | dispersed | |
| Car13g00066 | Car-Chr13:525705 | Car07g01016 | Car-Chr7:5858833 | 6.61E-36 | wgd | |
| Car14g00080 | Car-Chr14:428421 | Car07g01016 | Car-Chr7:5858833 | 1.83E-59 | wgd | |
| Car15g00128 | Car-Chr15:717305 | Car07g01016 | Car-Chr7:5858833 | 9.47E-37 | wgd | |
| Car06g00229 | Car-Chr6:1328421 | Car07g01016 | Car-Chr7:5858833 | 3.71E-62 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g01016 | - | - | mcha:111019441 | 225.713 |