Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01031 ATGGCCGCCACTTCCGCCGCCACCTCCTCCTTCATCGGAACACGCCTAGCCGACGTGCGGTCAAGTTCCGGCCGAGTCCAAGCCCGATTCTCATTCGGCAAAAAGAAAAGCCCGGCGAAGAAATCGCCTTCGTCAAAGCAGATTCCCGACCGACCTCTATGGTTCCCCGGAGCCAAGGCGCCGGAATGGCTCGACGGAAGCTTGGTCGGCGACTACGGATTCGATCCGTTCGGATTGGGGAAACCAGCAGAGTATCTGCAATACGATTTGGACTCGTTGGATCAGAATCTGGCGAAGAATGTGGCTGGAGATCTAATAGGGACGAGATTTGAGAACTCGGAAGTGAAATCGACGCCGTTTCAACCGTACACGGAGGTGTTTGGGTTGCAGAGATTTCGTGAGTGCGAGCTGATCCATGGAAGATGGGCAATGCTAGCAACCCTCGGCGCTCTCACCGTCGAATGGCTCACCGGCGTCACTTGGCAAGACGCTGGAAAGGTAGAATTGGTGGAAGGGTCATCGTACCTCGGGCAGCCGCTTCCGTTCTCGCTCACGGCATTGATCTGGATCGAAGTTCTGGTGATCGGATACATCGAGTTTCAGAGGAACGCGGAGCTAGAGCCGGAGAAGAGATTGTACCCTGGAGGGAAGTTTTTCGACCCGCTGGGGTTGGCGGAGGATCCGGAGAAGAAAGCTGTTCTTCAACTGGCTGAGATCAAACACGCTCGCCTCGCCATGGTTGCCTTCCTTGGGTTCGCTGTTCAAGCTGCTGTGACGGGGAAAGGGCCGCTCAATAACTGGGCCACCCATCTCAGCGACCCCCTCCACACCACCATCATTGACAACTTCTCCTCCTCTTCCTAA 864 56.02 MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSSS 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5968924 5970189 + Carg13269-RA Car07g01031 152265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01031 287 Gene3D Chlorophyll a/b binding protein domain 54 287 - -
Car07g01031 287 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 1 286 - -
Car07g01031 287 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 286 IPR001344 GO:0009765|GO:0016020
Car07g01031 287 SUPERFAMILY Chlorophyll a-b binding protein 47 284 - -
Car07g01031 287 MobiDBLite consensus disorder prediction 18 51 - -
Car07g01031 287 Pfam Chlorophyll A-B binding protein 60 256 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01031 Car-Chr7:5968924 Car11g00625 Car-Chr11:3410039 3.83E-41 dispersed
Car11g01195 Car-Chr11:9678099 Car07g01031 Car-Chr7:5968924 1.69E-28 transposed
Car15g00557 Car-Chr15:3074980 Car07g01031 Car-Chr7:5968924 1.22E-28 transposed
Car03g00315 Car-Chr3:4202847 Car07g01031 Car-Chr7:5968924 1.25E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01031 K08915 - csv:101208740 540.036