Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01077 ATGAGGGAAGAGCATTCGAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCAGATGAACTCATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTAGCTTTCGATATTCAAAATCCCACCAATTGCAGTCCGCCGTTGCCTTGCCCATCTCCGCCGCTTTCGAATCCCCTACCCGGCTCCGGCAACGGAATTCCGCTGCCCAACTCGGGGGATTTCGGCGATTCCGCTGATTTAGGCTCTGGCGCTGGTAGCGACGAACCAGCCCGGACCCTCAAGCGGCCACGCTTAGTCTGGACTCCACAGCTCCACAAGCGATTCGTTGACGCTGTTGCCCATTTGGGGATCAAAAATGCTGTCCCTAAGACCATAATGCAGCTCATGAGTGTTGATGGCTTAACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGTATGCAGGGTTTATCCAGTGGTGGCGGCGCCGCCGCCGCAGCTGGCTTGGTTGCTTCCTCTGATCCCGCCACCGACCATTTGTTCGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCCGCTCGTGCTAGTTCAGACCACTTCATGCCCTTTGTTCCCATGGCCACTCTACAGCAGCACCACCACCACCTGCAGCAGATGGCCGCAGCATCTGTCGTCGCCCACCCTCAGCTCCAGCCCCCCTATCATCGTGGGCAGTTTGGGTCACCATCAAACGGCCAATTTGAGCATCCATTTTTAGGTAGACAGTCCCAACCTATCCATAGAATGGGGGCACCAGTGCATAGTTCAGTTCCAAATTACATTGAGGATTTGGAATCAGGCAATGCCAGTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 900 53.89 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPTNCSPPLPCPSPPLSNPLPGSGNGIPLPNSGDFGDSADLGSGAGSDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGAAAAAGLVASSDPATDHLFASSPVPPHLLHSARASSDHFMPFVPMATLQQHHHHLQQMAAASVVAHPQLQPPYHRGQFGSPSNGQFEHPFLGRQSQPIHRMGAPVHSSVPNYIEDLESGNASGGRKVLTLFPTGDD 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6393751 6394650 - Carg13315-RA Car07g01077 152311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01077 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Car07g01077 299 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 299 - -
Car07g01077 299 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 299 IPR044841 GO:0003700|GO:0006355
Car07g01077 299 Gene3D - 94 156 - -
Car07g01077 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Car07g01077 299 MobiDBLite consensus disorder prediction 47 62 - -
Car07g01077 299 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Car07g01077 299 MobiDBLite consensus disorder prediction 279 299 - -
Car07g01077 299 MobiDBLite consensus disorder prediction 47 96 - -
Car07g01077 299 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00563 Car-Chr1:3314829 Car07g01077 Car-Chr7:6393751 2.91E-43 dispersed
Car03g00998 Car-Chr3:8012189 Car07g01077 Car-Chr7:6393751 3.82E-159 dispersed
Car07g01077 Car-Chr7:6393751 Car14g00453 Car-Chr14:2385588 4.65E-116 dispersed
Car07g01077 Car-Chr7:6393751 Car06g00019 Car-Chr6:195641 1.19E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3901 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01077 - - cmax:111467241 488.804