Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01094 ATGGACTTATTACAGTCTTTGGATCCTCAAATCCTTCTGGGTTTGGCTGTGGCTGTTTTAGCTCTTGCCTTTGGTGCTCTCTATTTGTTATCCTCGTCCAAGAAAACCAAATCCGGAGGTTGCTTGGATCCAGAGAATTTCAAGGAGTTTAAACTCATCAAGCGTGCGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCAAGTTCTACTTCAGTTTTGGGCCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGATGTTATCAAACCTTATACACCTATTACTTTGGATTCTGATGTCGGATATTTTGAATTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCACACCATTTCCGACAGATGCGTGTCGGTGATTTTCTGTCTGTGAAAGGGCCCAAGGGGCGATTCAGGTATCAACCAGGCGAGGTCAGAGCATTTGGGATGCTCGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCCATATTAGAAAATCCAAATGACAAGACGAAGGTACATCTCATTTATGCCAACGTCACCTACGAGGACATTCTTTTGAAGGAGGAGTTGGATCTTCTTGCCTCAAGGTACCCGGATAGCTTCAAGCTCTATTATGTTTTAAACCAGCCTCCTGAATCGTGGGACGGTGGCGTTGGATTCGTGACGAAGGAGATGATTCAAACCCATTGCCCTGCTCCTGCTTCTGATGTTCGGATTTTAAGATGTGGGCCACCACCAATGAACAAGGCCATGGCTGCTCATCTTGAAGCTCTTGGATACGCACCAGAGATGCTGTTCATGTTCTGA 846 45.86 MDLLQSLDPQILLGLAVAVLALAFGALYLLSSSKKTKSGGCLDPENFKEFKLIKRAQLSHNVAKFTFTLPSSTSVLGLPIGQHISCRGKDGQGEDVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLSVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLASRYPDSFKLYYVLNQPPESWDGGVGFVTKEMIQTHCPAPASDVRILRCGPPPMNKAMAAHLEALGYAPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6507820 6511889 - Carg13332-RA Car07g01094 152328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01094 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491
Car07g01094 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Car07g01094 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01094 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101212569 498.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01223 Car-Chr5:11473530 Car07g01094 Car-Chr7:6507820 5.24E-67 dispersed
Car07g01094 Car-Chr7:6507820 Car12g01193 Car-Chr12:11362968 5.18E-59 dispersed
Car06g00039 Car-Chr6:295623 Car07g01094 Car-Chr7:6507820 3.56E-174 transposed
Car20g00007 Car-Chr20:34752 Car07g01094 Car-Chr7:6507820 1.09E-135 transposed
Car03g00161 Car-Chr3:2905433 Car07g01094 Car-Chr7:6507820 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00943 CST 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Car15g00942 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.1e-56 216.5
Car14g01692 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.6e-52 202.6
Car06g01070 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Car17g00096 . 1 133 NADPH P450 reductases AT5G53560 63.2 7.6e-47 183.7
Car02g01436 . 6 131 NADPH P450 reductases AT5G53560 63.5 4.6e-44 174.5
Car19g00129 . 42 169 NADPH P450 reductases AT5G53560 63.3 1.0e-43 173.3
Car06g01070 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car14g01692 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car17g00096 . 1 133 NADPH P450 reductases AT5G48810 63.0 1.0e-46 183.3
Car19g00129 . 40 170 NADPH P450 reductases AT5G48810 62.4 5.7e-45 177.6
Car02g01436 . 6 132 NADPH P450 reductases AT5G48810 62.0 3.7e-44 174.9
Car02g00943 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Car15g00942 CST 1 134 NADPH P450 reductases AT5G48810 57.4 1.8e-43 172.6
Car14g01692 . 22 133 NADPH P450 reductases AT2G32720 84.8 8.7e-51 196.8
Car06g01070 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Car17g00096 . 22 133 NADPH P450 reductases AT2G32720 76.8 8.4e-46 180.3
Car02g01436 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.8e-41 165.2
Car19g00129 . 59 170 NADPH P450 reductases AT2G32720 70.5 1.8e-40 162.5
Car02g00943 CST 22 133 NADPH P450 reductases AT2G32720 66.1 5.3e-40 161.0
Car15g00942 CST 22 133 NADPH P450 reductases AT2G32720 64.3 4.5e-39 157.9
Car07g01094 . 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.8
Car03g00161 CCT 2 281 NADPH P450 reductases AT5G17770 80.7 6.1e-131 464.2
Car06g00039 CCT 2 280 NADPH P450 reductases AT5G17770 77.5 1.1e-124 443.4
Car20g00007 . 1 253 NADPH P450 reductases AT5G17770 68.5 5.0e-101 364.8
Car02g00943 CST 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Car15g00942 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.1e-56 216.5
Car14g01692 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.6e-52 202.6
Car06g01070 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Car17g00096 . 1 133 NADPH P450 reductases AT5G53560 63.2 7.6e-47 183.7
Car02g01436 . 6 131 NADPH P450 reductases AT5G53560 63.5 4.6e-44 174.5
Car19g00129 . 42 169 NADPH P450 reductases AT5G53560 63.3 1.0e-43 173.3
Car06g01070 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car14g01692 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car17g00096 . 1 133 NADPH P450 reductases AT5G48810 63.0 1.0e-46 183.3
Car19g00129 . 40 170 NADPH P450 reductases AT5G48810 62.4 5.7e-45 177.6
Car02g01436 . 6 132 NADPH P450 reductases AT5G48810 62.0 3.7e-44 174.9
Car02g00943 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Car15g00942 CST 1 134 NADPH P450 reductases AT5G48810 57.4 1.8e-43 172.6
Car14g01692 . 22 133 NADPH P450 reductases AT2G32720 84.8 8.7e-51 196.8
Car06g01070 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Car17g00096 . 22 133 NADPH P450 reductases AT2G32720 76.8 8.4e-46 180.3
Car02g01436 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.8e-41 165.2
Car19g00129 . 59 170 NADPH P450 reductases AT2G32720 70.5 1.8e-40 162.5
Car02g00943 CST 22 133 NADPH P450 reductases AT2G32720 66.1 5.3e-40 161.0
Car15g00942 CST 22 133 NADPH P450 reductases AT2G32720 64.3 4.5e-39 157.9
Car07g01094 . 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.8
Car03g00161 CCT 2 281 NADPH P450 reductases AT5G17770 80.7 6.1e-131 464.2
Car06g00039 CCT 2 280 NADPH P450 reductases AT5G17770 77.5 1.1e-124 443.4
Car20g00007 . 1 253 NADPH P450 reductases AT5G17770 68.5 5.0e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car07g01094 Car_Chr07 FPKM 0.801498 0.686242 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0