Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01140 ATGAACGACTTGATGACTCAATCGTTCACGAGCTATGTGGATCTGAAGAAGGCCGCCATGAAAGATATCGACCTCGAAGCCGGTCTTGAAACGGCGTCGTCTGATACCGACAATGGCGATATGGGGCTCTTCCTCGAAGAGGCTGAGAAGGTGAAATTGGAGATGGGTTCCATTAGAGAGATTCTTGGAAAGCTCCAGCAGGCCAATGAGGAGACGAAATCTGCTCATAAACCCGAAACTTTGAAATCGCTTCGCCAGACGATTAATGGTGACATCGTTACCGTCCTGAAGAAGGCTCGATCGATCCGTTCCAAGCTTGAGGAAATGGACCGTGCTAATGATGCTAAGAAGCGGCTCTCCGCTAGCAAAGAAGGAACTGCCATATACAGGACTCGTATCGCGGTGACAAACGGCCTACGAAAGAAGCTAAAGGAGCTAATGATGGAGTTTCAAACCCTAAGACAAAGGATGATGACGGAGTACAAAGAGACAGTGGAACGACGATACTTCACGGTGACGGGGGAGCACCCAGAGGAGGAGGTGATAGAGAAGATAATATCGAACGGAGGCGAGGAGTTTTTGGGGAGGGCAATAGAGGAGCACGGGCGGGGGAAGGTGGCGGAGACGGTGGTGGAGATACAGGACCGACACGGGGCGGCAAAGGAGATCGAGAGAAGCTTGCTAGAGTTGCACCAGGTGTTCTTGGACATGGCAGTGATGGTGGAAGCACAAGGGGAGAAAATGGATGACATTGAACACCATGTGATGAATGCTTCACAATATGTCAGAGATGGGAGTAAGGATTTGAAGAGTGCTAAGGATTTGCAAAGGAGCAATAGGAAATGGATGTGCTTTGGGGTTTTGCTTTTGCTCATTATTATTTTGGTTGTTGTTATTCCTATTGCTGTTAGTTTCGGGAGTTCTTGA 927 48.76 MNDLMTQSFTSYVDLKKAAMKDIDLEAGLETASSDTDNGDMGLFLEEAEKVKLEMGSIREILGKLQQANEETKSAHKPETLKSLRQTINGDIVTVLKKARSIRSKLEEMDRANDAKKRLSASKEGTAIYRTRIAVTNGLRKKLKELMMEFQTLRQRMMTEYKETVERRYFTVTGEHPEEEVIEKIISNGGEEFLGRAIEEHGRGKVAETVVEIQDRHGAAKEIERSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGSKDLKSAKDLQRSNRKWMCFGVLLLLIIILVVVIPIAVSFGSS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6851525 6853033 - Carg12614-RA Car07g01140 152374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01140 308 Pfam Syntaxin 44 245 IPR006011 GO:0016020
Car07g01140 308 Coils Coil 102 122 - -
Car07g01140 308 ProSitePatterns Syntaxin / epimorphin family signature. 216 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car07g01140 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Car07g01140 308 Coils Coil 136 156 - -
Car07g01140 308 Pfam SNARE domain 247 298 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01140 Car-Chr7:6851525 Car13g00552 Car-Chr13:7435500 1.56E-101 dispersed
Car02g01474 Car-Chr2:9601977 Car07g01140 Car-Chr7:6851525 1.89E-53 transposed
Car03g00676 Car-Chr3:6006696 Car07g01140 Car-Chr7:6851525 6.77E-71 transposed
Car03g00212 Car-Chr3:3439074 Car07g01140 Car-Chr7:6851525 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01140 K08486 - csv:101220775 524.628