Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01144 ATGGCAGAAGTTGATCCTCCTCCCTTCTTCCTTTGTCCCATCTCTTTGGGAATTATGAAAGATCCGGTCACGGTTGCCTCCGGCATAACCTACGATCGGGAGAACATCGAGAGATGGTTGTTTTTCGATAAACATACGACGTGTCCGGTCACGCAGGTGGTCTTGTCGGACTTTGATATCACTCCCAATAATACTCTCTCCCGATTGATTCAAGCTTGGTGCACCGTCAACAACAGGGTCGAGAGGATTCCGACACCAAAGCCTCCGGTTGATAAGAAGGAAGTTGTTAAGATTCTTGCAAATGTGAAGTTATCCTTGTTCTCTCAACAAAATTGTTTGCGACGACTCCGATCCATTGCATCGGCGAACGAGACGAATAAACATTGCATGAAAGCTGCCGGAGCTATTTCGCGTTTGACGATCCCGAATTTGGGCGATGAGGCTTTGAGCATTCTTTACAAACTTCAAATCTCTGAATCCGGCCTCAAGTTTCTTCTCGCCAACAATGGCGGCATCTTCGTCACAACCCTAACAAAATTCTTACAAAACGGCACTTATGGCTCCCGAGCGTATGCAACAATGCTTCTTCAATCGATGTTCGAAGTCGCCGATGCGATTCAGATTCGCACTCTAAATCTTCAATTCTTCGTCGAAATCGTCCAAATTCTTAAGGATCAGATCTCGAAACAGGCCTCCAAATCGGCATTGAAATTGCTAATCGGACTCTGTTCGAGTTTCAGAAACAGAGTACATGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTCCTGGATCTCGATTCGTCGGAGAAGCGTTTGTGCGAGATGATTCTCGTGGCGCTTGATCTGCTCTGCGGCTGTGCTGACGGCAGAGCGGAGCTGTTGAACCACGCGGCGGGGATCGCCGTCGTGTCGAAGAAGATTCTCAGAGTTTCGTCGCTTGGAAGCGAGAAGGCCGTCGGAATTTTGTGCTCTATTGCGAGATTCTCGGCGAGCCAATCCGTCGTTCAGGAAATGGTGCGGCTCGGAGTTGTGATGAAGCTCTGTTTTCTGCTTCAAGTGGTCGGCGCCGGGGCGAAAGCGAAAGAGAAGGCGAAAGAGATTCTAAAGCTTCATGGTCGAACATGGCGGAATTCTTCATGTTTTCCTTCGAGTTTGCGACCTTCTTATCCATTTTAG 1185 48.78 MAEVDPPPFFLCPISLGIMKDPVTVASGITYDRENIERWLFFDKHTTCPVTQVVLSDFDITPNNTLSRLIQAWCTVNNRVERIPTPKPPVDKKEVVKILANVKLSLFSQQNCLRRLRSIASANETNKHCMKAAGAISRLTIPNLGDEALSILYKLQISESGLKFLLANNGGIFVTTLTKFLQNGTYGSRAYATMLLQSMFEVADAIQIRTLNLQFFVEIVQILKDQISKQASKSALKLLIGLCSSFRNRVHAVQAGAVPVLIDLLLDLDSSEKRLCEMILVALDLLCGCADGRAELLNHAAGIAVVSKKILRVSSLGSEKAVGILCSIARFSASQSVVQEMVRLGVVMKLCFLLQVVGAGAKAKEKAKEILKLHGRTWRNSSCFPSSLRPSYPF 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6877701 6879608 - Carg12618-RA Car07g01144 152378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01144 394 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Car07g01144 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 394 - -
Car07g01144 394 SUPERFAMILY RING/U-box 3 78 - -
Car07g01144 394 PANTHER WDSAM1 PROTEIN 1 394 IPR045185 GO:0061630
Car07g01144 394 CDD RING-Ubox_PUB 10 52 IPR045210 -
Car07g01144 394 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Car07g01144 394 SUPERFAMILY ARM repeat 95 299 IPR016024 -
Car07g01144 394 Gene3D - 93 375 IPR011989 -
Car07g01144 394 Pfam U-box domain 7 77 IPR003613 GO:0004842|GO:0016567
Car07g01144 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00464 Car-Chr6:2564146 Car07g01144 Car-Chr7:6877701 7.94E-131 dispersed
Car07g01144 Car-Chr7:6877701 Car20g00128 Car-Chr20:714388 5.37E-131 dispersed
Car03g00221 Car-Chr3:3507165 Car07g01144 Car-Chr7:6877701 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01144 - - cmo:103485961 555.829