Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01154 ATGACGAGACAGAAAATTCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACTTTCTCAAAGAGAAGAAGAGGGCTATTCAAAAAAGCTCATGAATTAGCCACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGCAAGCTATTTGACTATTCTAGCTCAAGCATGCAGGAGTTGCTGAGAAGACATAACATGATACCAGAGGTTAATAGCTTTGGTCAGCAGCCTCCATCTCAGGTTGAAAAGGATGCCTATGCTAAATTGAGTGAAGAATTTGCAGCCAAAACCAAAGAGCTTAAGCATATGAGGGGAGAGGATCTTCAAGATTTGGGAATAGAAGAATTAAAGCAGCTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTTATAGAGACCAAGGATGACAAGTTTCTAAAAGAAATTGGTGCTGGAAAGGAAAAGGAAGCTTTGTTGATGAAAGAGAATCAGAGACTAAGGAATGGGATGGTAACTTTGAATCATAGGGAGCAAGAACAAGCAGTGATTGGTGGGAGCTCCTTGGGGTCAAAGTCAAACACCACCAATAGCAGCTCCTCACCAAACCCTAATTCTCATGATTTTGATGACATTTCTCTTAAATTGGGGTTAGTAATTTTCTTACATTTACTGTACATTACCCTTTTGAATCCCTTCTATTTTTCATCTTTTTACTTTGAGGGCGTTTTTTTTTTGTGA 732 38.66 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMQELLRRHNMIPEVNSFGQQPPSQVEKDAYAKLSEEFAAKTKELKHMRGEDLQDLGIEELKQLEKLLEIGLNRVIETKDDKFLKEIGAGKEKEALLMKENQRLRNGMVTLNHREQEQAVIGGSSLGSKSNTTNSSSSPNPNSHDFDDISLKLGLVIFLHLLYITLLNPFYFSSFYFEGVFFL 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6960222 6965656 + Carg12628-RA Car07g01154 152388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01154 243 Coils Coil 91 111 - -
Car07g01154 243 MobiDBLite consensus disorder prediction 181 203 - -
Car07g01154 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car07g01154 243 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g01154 243 Pfam K-box region 85 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g01154 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car07g01154 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01154 Car-Chr7:6960222 Car19g00350 Car-Chr19:5391161 6.44E-59 dispersed
Car07g01154 Car-Chr7:6960222 Car12g00179 Car-Chr12:1106121 4.37E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3907 PF01486 K-box 2.80E-15 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01154 - - csv:101223132 299.286