Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01215 ATGGGAAAGGAAATTTTGTTGCAGTGTGTTGATGAAAATGCTGAAGTGAATGGTTGTTCAACAATTGGGAATGATGAAGATTTGGGTGCTCGGTCTCGCCATAGTGTAGGCAAGGAATTTGGGGCAAGTTGTCGTGTGTGTCAATGTACTGAATCGGACAGAAGGGGTGATGCTGCCTTAGGATTTCTTGGCATCACTTCTCCGAAAATGGAAGCAAGAAAAAACGACGGGGATTCTAAGCCCGAGAAGCAAAGTGTAAAAAATGTTAAAAGGGATTCTGGTTCAATTGAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATTGAAATGGGTTCATGTCATTATATAGATGCATTAGTCGAGCTTGGATGTTCTTGTAAGAGTGACCTTGCTCTCGTACATTATGCGTGTGCTCTCAAGTGGTTTGTCAATCATGGATCTACAGTTTGTGAAATCTGTGGATGTGTTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAGGAATATGAAGCTTTAAGGGAAAGAACTGCTAATGGGGAACCTAATCCTACGCATACTAATACCAGTACTGATATAGATCCAGATGCTGTTGCTGCTGTCCGCAGGCAGCGACTTTGTGAAATCTCGTTGTGGTTTAGTCCTCATAACTATAGTAGCAACAATAATTCTACTGCAGCCTCCCAGGTTGCTTTGGAACATCCGAATATCGTCCAGGAAAATGTTATTCATGCTGAAAATCGTGCAATCAGATGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACCGGACTGCTTACTGTTACGCTCGCTTGCCTAATAGCTCCTCGTCTGGGGAAGAAAACTGCGAGAAGTGGCCTTCACATTCTTCTTGGAGGAGTTTGTGCGCTAGCCGTGGTTGTTTTCTTCCGCTTTGTGAGTATAATGCATTTTATACGGCCCTGA 972 43.0 MGKEILLQCVDENAEVNGCSTIGNDEDLGARSRHSVGKEFGASCRVCQCTESDRRGDAALGFLGITSPKMEARKNDGDSKPEKQSVKNVKRDSGSIEFIGPNGEVFICKADIEMGSCHYIDALVELGCSCKSDLALVHYACALKWFVNHGSTVCEICGCVAENIRTDDFRKVVSSLKEYEALRERTANGEPNPTHTNTSTDIDPDAVAAVRRQRLCEISLWFSPHNYSSNNNSTAASQVALEHPNIVQENVIHAENRAIRWAVEGTGILLATGLLTVTLACLIAPRLGKKTARSGLHILLGGVCALAVVVFFRFVSIMHFIRP 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7423338 7425118 + Carg12690-RA Car07g01215 152449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01215 323 Pfam RING-variant domain 124 157 IPR011016 GO:0008270
Car07g01215 323 ProSiteProfiles Zinc finger RING-CH-type profile. 100 164 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00028 Car-Chr3:324035 Car07g01215 Car-Chr7:7423338 3.17E-170 dispersed
Car07g01215 Car-Chr7:7423338 Car07g01016 Car-Chr7:5858833 3.06E-09 dispersed
Car07g01215 Car-Chr7:7423338 Car15g00128 Car-Chr15:717305 6.57E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01215 - - csv:101218157 507.679