Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01268 ATGGGAACTCCGGAATTCCCTAATCTTGGAAAGCATTGCAGCTTTGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGTTGTCACCAGGTCTTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAACTGATAGGCGTGATGTTACTGTTGTCATTTGTCCGCTCTGTGCCAAAGGAGTTCGTCTCATTCCCGATCAAGACCCGAACATTACGTGGGAGATTCACGTAAACACTGAATGTGATCCTTCAAATTATGATAAAGCCACAAAGAAGAAAAAGTGCCCAGTACCTGGCTGCAGGGAGTTGTTAACGTTTTCAAACACGATTAAGTGCCGGGATTGCTTGGTAGACCATTGTTTGAAGCACCGTTTTGGACCCGACCATAAGTGTTCGGGACCGAAAAAACCAGAACCAGCTGGCTTTCCATTTGTTGGTCTTCTAAGTCGAAGTAGAAAAGAAGAGAAGGGCCCTAAGAGAGCATTGCCGCCCACAACATCTTCCTCTAGTTGGACTACATCCCTCCTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAGGCGAGCATGACGAAGTTGTCGAATGAAATCAATCAGGCTTGGAAAACAAAAAACAGCAGCAGCAGCAGCAACGGAAGTGCAAATGGACAAGTCGAGCAATGTCCACAATGTGGTGCTAAGTTTTCGTCAGTTTCATCGTTAATAGACCATGTCGAAAAAGTCCACGAAAAGGGTGGCAATCGACCTGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCGAAGTGTAGTAGAGGATTTGTTGATCCTGTCGCCCTCGTGGAGCATATTGAGAGGGAGCATGGTGGTACTTCAAGAGCTTGA 879 46.08 MGTPEFPNLGKHCSFEDCKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKTDRRDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYDKATKKKKCPVPGCRELLTFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKPEPAGFPFVGLLSRSRKEEKGPKRALPPTTSSSSWTTSLLNAASSVKASAEASMTKLSNEINQAWKTKNSSSSSNGSANGQVEQCPQCGAKFSSVSSLIDHVEKVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIEREHGGTSRA 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7883740 7886347 + Carg12744-RA Car07g01268 152502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01268 292 Pfam C2H2-type zinc finger 226 248 - -
Car07g01268 292 MobiDBLite consensus disorder prediction 157 176 - -
Car07g01268 292 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Car07g01268 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 291 IPR013087 -
Car07g01268 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 248 IPR013087 -
Car07g01268 292 ProSitePatterns Zinc finger C2H2 type domain signature. 227 248 IPR013087 -
Car07g01268 292 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Car07g01268 292 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Car07g01268 292 Pfam AN1-like Zinc finger 13 50 IPR000058 GO:0008270
Car07g01268 292 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00572 Car-Chr14:3108693 Car07g01268 Car-Chr7:7883740 3.16E-37 transposed
Car03g00064 Car-Chr3:802954 Car07g01268 Car-Chr7:7883740 1.56E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3915 PF01428 zf-AN1 1.50E-07 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01268 - - cmax:111466071 585.104