Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00002 ATGGGCTGTTTTCCCTGTTTCGATTCGAGGGAAGAGGAGAAGCTGAATCCCGAAAAGGAAAGCGATGATGGTAAGCAACACCATCCAATGATTCCACCCAACATTGCCAAATTGCCTTCTGGAATAGACAAACTTAGATCAAAAGGCAATGGTGGTTCCAAAAGGGAACAGCAGAATCCCAAGGATGGGCCTCTTGTCAATATTTCTGCTCAAACATTCACTTTCCGGGAGCTTGCAATCGCAACCAAGAATTTTAGACCTGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGCCTCGAAAGCTCAGGCCAGATTGTTGCTGTAAAACAGTTGGATAGGAATGGTCTTCAAGGAAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCAGATGGGGATCAACGGCTTCTTGTATATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCATGAAATTCCACCTGATAAGGAACCCCTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGTTTAGAGTACTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGATGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCCAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGAACTTATGGTTACTGTGCTCCCGAGTACGCCATGACCGGACAATTGACCGTCAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTGATAACTGGACGGAGAACCATTGATAGCACCCGGCCCCAAGGCGAACAGAACCTTGTCACATGGGCACGCCCATTTTTTAATGACCGCAGAAGATTCTCAAAATTGGCTGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGTCTGTACCAGGCTCTAGCTGTGGCATCCATGTGTACCCAAGAACAGGCTGCAGCCCGTCCGCTGATTGGAGACGTGGTCACTGCCCTGTCATACTTGGCAAATCAATCCTACGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTCAGAGAGGTTCTGGTGATCGGGACGAAAGACGGAACAGAGACGAGAAAGTTGCAGTAAAGAATGAAGACGGGGGAGCATGTGAACGAAGGTGGACGTTGGATGGTCCGGGGAAGGACGAGTCCCCAAGGGAGAATGGTAGGATTTTGAATAAGGATTCAGAGAGAGAACGTGCAGTGGCTGAGGCGAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGGCGACAGAGCGCACAAGGCAGTTTTGATGGTTCGAATGGGTAA 1398 47.14 MGCFPCFDSREEEKLNPEKESDDGKQHHPMIPPNIAKLPSGIDKLRSKGNGGSKREQQNPKDGPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESSGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRTIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAAQRGSGDRDERRNRDEKVAVKNEDGGACERRWTLDGPGKDESPRENGRILNKDSERERAVAEAKMWGENWREKRRQSAQGSFDGSNG 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8045 11848 + Carg03822-RA Car08g00002 152576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00002 465 Pfam Protein kinase domain 90 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00002 465 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Car08g00002 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Car08g00002 465 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00002 465 PANTHER OS07G0668900 PROTEIN 1 460 - -
Car08g00002 465 MobiDBLite consensus disorder prediction 52 66 - -
Car08g00002 465 MobiDBLite consensus disorder prediction 366 435 - -
Car08g00002 465 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 460 - -
Car08g00002 465 CDD STKc_IRAK 91 359 - -
Car08g00002 465 MobiDBLite consensus disorder prediction 7 27 - -
Car08g00002 465 SUPERFAMILY Protein kinase-like (PK-like) 62 359 IPR011009 -
Car08g00002 465 Gene3D Phosphorylase Kinase; domain 1 48 161 - -
Car08g00002 465 MobiDBLite consensus disorder prediction 1 66 - -
Car08g00002 465 MobiDBLite consensus disorder prediction 382 435 - -
Car08g00002 465 Gene3D Transferase(Phosphotransferase) domain 1 162 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00002 Car-Chr8:8045 Car14g01463 Car-Chr14:12216354 0 dispersed
Car14g01008 Car-Chr14:8279901 Car08g00002 Car-Chr8:8045 1.46E-92 dispersed
Car17g01306 Car-Chr17:9830000 Car08g00002 Car-Chr8:8045 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89026 PF00069 Pkinase 4.00E-45 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00002 K13430 - csv:101219880 882.478