Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00025 ATGGCTGACGGTCATGAAACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCTAGAGGAAATGGGACTAGTATGATATCTCTTATCATGCCTCCGCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAGAGCAGGGTGAATCGCCAATCTGTTTTGGGTGCTATCACATCTGCTCAGCAGAGACTCAAGCTGTATAGCAAAGTTCCTCCGAATGGGCTTGTGCTTTATACTGGGACTATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCACTATTGATTTTGAACCTTTCAGACCTATAAATGCATCTCTGTATCTCTGTGACAATAAGTTCCATACGGAAGCCCTGAATGAACTTTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTCTTTGGTACATTGAGTGGTAACACACGTGAGGTTCTTCACAAATTTAGTGTTGACCTTCCTAAGAAACATGGAAGAGGAGGTCAATCAGCACTTAGGTTTGCCCGTCTTCGGATGGAGAAGCGGCACAACTATGTCAGGAAAACAGCAGAGCTTGCAACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCTAATGTTGCAGGATTGATACTGGCTGGATCAGCCGACTTCAAAACAGAGCTCAGTCAATCAGACATGTTTGATCCTCGTCTTCAAACAAAAATACTTAATGTAGTTGATGTGTCTTATGGAGGAGAAAATGGATTTAATCAGGCCATTGAACTGTCCTCCGAGATCTTGTCTAATGTAAAATTTATACAGGAGAAGCGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACGGGGAAATATGTTTTTGGTGTTGATGACACACTGAAAGCTCTGGAGATGGGCGCTGTTGAGATACTCATTGTTTGGGAAAATTTGGATATCAACAGGTATGTTTTAAAGAATGCTTCCACTGGTGAGATTGTTATAAAGCACTTGAATAAGGAACAGGAGGCCAATCAGAGCAACTTCCGTGACTCCGTCACCTCTGCTGAGTTGGAGGTTCAAGAAAAGGTGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAACAGTTTGGTTGCACACTTGAGTTCGTCACCAACAAATCACAGGAAGGATCACAGTTCTGCAGGGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATGAGATCGTTTGATGAGCTATCTGATGGGGAAGAGTACGGTGATTCTGAATAG 1311 41.8 MADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYSKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQTKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNASTGEIVIKHLNKEQEANQSNFRDSVTSAELEVQEKVALLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDGEEYGDSE 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 120463 121773 + Carg03799-RA Car08g00025 152599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00025 436 Gene3D eRF1 domain 2 136 277 IPR042226 -
Car08g00025 436 SUPERFAMILY L30e-like 278 420 IPR029064 -
Car08g00025 436 Gene3D eRF1 domain 1 2 135 IPR024049 -
Car08g00025 436 Gene3D - 279 436 IPR029064 -
Car08g00025 436 SUPERFAMILY Translational machinery components 142 276 - -
Car08g00025 436 SMART eRF1_1_2 4 140 IPR005140 -
Car08g00025 436 Pfam eRF1 domain 1 18 138 IPR005140 -
Car08g00025 436 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 436 IPR004403 GO:0003747|GO:0006415
Car08g00025 436 Pfam eRF1 domain 3 281 418 IPR005142 -
Car08g00025 436 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Car08g00025 436 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 436 - -
Car08g00025 436 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 12 417 IPR004403 GO:0003747|GO:0006415
Car08g00025 436 Pfam eRF1 domain 2 144 277 IPR005141 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g01283 Car-Chr17:9718254 Car08g00025 Car-Chr8:120463 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00025 K03265 - csv:101218139 831.632