Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00045 ATGGCTTCTACTACTGGTCTTGTAGTTGGATCTTTTGTTTGGTTGGAGGATTCTGAAGAAGCTTGGATAGAGGGCGAAGTTTTAGAAATTCGTGGCGATGAAATTAAAGTCGTATGCACCTCGGGGAAGACGGTTGTAGTTAAAGCAGCTAATGTCTATCCCAAAGATTCCGAAGTGCCACCATGTGGGGTGGATGACATGACCAAGTTGGCTTACTTACACGAACCAGGGGTGCTACACAATTTAAAATTGAGATATGATATCAACGAAATATATACTTATACGGGGAACATATTGATTGCGGTGAACCCTTTTACAAAGTTACCTCATCTCTATGATAGCTATATGATGGCACAATATAAAGGGGCTGCATTCGGTGAGCTGAGTCCACATCCGTTTGCAGTTGCAGATGCTGCCTACAGACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACGAAGTTGCTTATGCGTTATCTTGCGTATATGGGAGGGAGAGCTGCTACTGAAGGGAGGTCTGTTGAGCAGCAAGTTCTGGAGTCAAATCCTGTTCTAGAAGCATTTGGGAATGCAAAGACGGTTCGGAACAACAACTCAAGTCGATTCGGTAAGTTTGTGGAGATCCAATTTGACCAAAGGGGAAGAATATCAGGTGCTGCTATCAGAACTTACTTGCTGGAAAGATCACGTGTTTGTCAGGTGTCAGATCCGGAGAGAAATTATCATTGCTTCTACATGCTTTGTGCTGCGCCACCAGAGGAGGTCAAGAAGTATAAATTGGGAAACCCAAGAGATTTCCATTATCTAAATCAATCAAATTGCTATGAGTTGGATGGAATTGATGATGCCAAGGAATATATTGCTACGAGAAAAGCAATGGAAGTCGTTGGAATAAGTTTGGATGAGCAGGATGGAATTTTTCGTGTCGTGGCTGCAATTCTTCATCTTGGAAACATAGAATTTGCAAAAGGGAAGGAGGCTGATTCTTCTGTTCCCAAAGATGAAAAATCTCGGTTCCATCTTAGAACTGCTGCTGAGCTTTTCATGTGTGATGAAAAGGCCCTGGAAGATTCTCTCTGCAAACGTGTGATCGTCACTCGTGATGAAACTATCACTAAGTGGCTGGATCCAAATTCTGCAGCTCTTAGCCGAGATGCTCTGGCAAAAATTGTATACTCTAGGTTGTTTGACTGGCTGGTGGACAAAATTAATAATTCAATTGGTCAGGACCCTGATTCAAAGTTCTTGATTGGAGTGCTGGATATCTATGGATTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTCAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTACACTAAAGAGGAAATTGATTGGAGTTATATTGATTTTGTTGATAATCAAGATGTCCTTGATCTCATTGAAAAGAAACCTGGTGGTATCATTGCCCTTCTGGATGAAGCTTGTATGTTCCCCAGATCAACTCATGAAACATTTGCTCAAAAGTTGTATCAGACATTCAAAAACCATAAACGCTTCAGCAAACCAAAATTAGCCCGGAGTGACTTCACCATTGTTCATTATGCTGGTGATGTCACCTATCAGACCGATTTATTTCTGGACAAAAATAAAGACTACGTTGTTGCTGAACATCAAGCGCTCTTGGGTGCCTCCAAATGCTCCTTTGTGTCGTGTTTGTTTCCTCCATTAGCTGAAGAATCATCCAAATCTTCGAAGTTCTCATCAATAGGTTCTCGTTTCAAGCTGCAATTGGTAGCACTTCTGGAAACTCTAAGTGCTACTGAGCCCCATTACATTCGATGCGTAAAGCCCAATAATCTTCTAAAGCCTTCTATCTTCGAGAATCAAAATATATTACAACAATTACGATGTGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCTGGTTTTCCAACAAGGAAAACATTTGATGAATTTGTTGACCGATTTGGACTCCTTGCACCCGAAGTTTTGGATGGAAGTTCTGATGAAGTGGCTGCTTGCAAGAGGCTTCTAGAGAAGGTTGGACTTAAAGGATACCAGATCGGTAAGACAAAAGTCTTTCTTAGAGCTGGTCAGATGGCTGAACTTGATGCACTCAGGACTGAGATCTTAGGGAGATCTGCAAGTATTATTCAGCGGAAAGTTCGTTCTTATTTGGCACGTAGAAGTTTTGTGTTGCTTCGGAGGTCAGCTACACATCTACAATCTGCATGTAGAGGACAACTTGCTCGACGAGTATTTGAGGGCATGAGGAGAGAAGCTTCTTCTATAATGATTCAAAGGAATTTGCGCATGCATATCTGCAGGAAAGCTTACAAAGAAAAGTACTCTTCAGCTGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGCAATGAGCTACGCTTCAGAAGGCGGTCTAAAGCAGCAATTATTATTCAGAGCTACTGTCGTAGATATTTGGCTCAGCTGCACTATAAGAAGTTAAAGAAAGCAGCAATCACCACTCAATCTGCATGGAGAGGAAGAGTTGCTCGTAAGGAACTACGGAAACTGAAGATGGCTGCAAAGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAAGAATTAACGTGGAGACTGCAGTTGGAGAAGCGCATGAGGGCTGATTTGGAAGAAGCTAAAACACAAGAAAACGAGAAGCTGCAATCTGCTTTGCAAGATATGCAGCTTCAGTTGAAAGAAACAAGAACGATGTTTGAGAAGGAACGAGAAGCTGCAAAGAAGGCTGCCGATATTATTCCAATTGTGAAGGAGGTTCCAGTTATTGATACTGCGATAATCGAGAAAATTTCTGGTGAAAACGAAAAGCTCAAGGCGTTGGTATGTTCACTGGAAAAGAAAATTGGCGAAACAGAGAAAAAATATGAAGAGGCGAACAGAGTTAGTGAAGAACGGTTGAAGCAAGCATCGGAGGCCGAAACAAAAATCATTCAATTAAAGACTGCAATGCAGAGGCTTGAACAAAAGTTCTCAAATATTGAATCTCAAAATCAAATTCTTCGCCAGCAGACCTTCATGACAACACCAGTAAAAAAAATGGCTGACCATCTTCCTATTGCAGTAGCAGAGAAATTGGAGAACGGTAGCCATTTGATTGAAGATAACAAAATCGATGAGCAGCTCGTAACACCCGTGAAAGCGCTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTCGACCTCTTTTCGAAAATCAACACGAGAATGTTGATGCTCTTGTTAGTTGTGTCATGAACAACATTGGGTTCAGTAATGGGAAGCCTGTAGCTGCCTTTACCATTTATAAATGTCTTCTTCACTGGAAATCTTTCGAAGCCGAAAAAACAAGTGTGTTCGATCGCCTAATTCAGATGATTGGATCTGCAATAGAGAATCAAGATAACAATGATCATCTAGCCTATTGGTTGTCGAACACATCTGCGCTACTGTTCTTGCTTCAAAGAAGCTTGAAAGCTGCCGGTGCTCCCCGAAAACCGCCAACTTCAACATCCTTATTTGGAAGGATGACTATGGGTTTTCGTTCGTCTCCTTCTTCCAACAGTCTTGGATCTGCGCTTAAGGTCGTGCGCCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGTTGACAGCATATGTCGAAAAAATATTCGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACATCATTGCTGTCCTTGTGTATCCAAGTACCAAGAACATCGAAGGGAGTATTACGATCGGGAAGATCATTTGGAAAAGATACTCAAACAAATTACTGGCAGAGCATCATAGAATGCCTCAACATGCTTCTGTGTACATTGAAAGAAAATTTTGTTCCGCAAATACTTACCCAGAATATCTTTGTTCAAAACTTTTCATATATTAATGTTCAACTCTTCAATAGCCTTCTTCTTCGTCGAGAATGTTGTACGTTCAGCAATGGGGAATATGTCAAATCCGGGTTAGCTGAGTTGGAGCTTTGGTGCTGCCAGGCAAAAGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAATACAGAATTTCATATGATGAAATCACCAATGATCTTTGCCCGATTCTGAGTGTCCAGCAACTTTATAGAATATGTACACTCTACTGGGATGACAACTATAACACTCGAAGCGTGTCGCCTGATGTAATATCCAGTATGAGAGTGCTCATGACTGAGGACTCCAACAGTGCAGTTAGCAGTTCCTTCCTATTGGATGACAATTCTAGCATCCCTTTCTCGGTCGAAGACCTCTCGAACTCACTGCAAGAGAAAGATTTCTGCGGCGTGAAGCCTGCCGACGACTTGCTTGAGAACCCAGCCTTCCAATTTTTAAACGAGTGA 4527 41.64 MASTTGLVVGSFVWLEDSEEAWIEGEVLEIRGDEIKVVCTSGKTVVVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTKLPHLYDSYMMAQYKGAAFGELSPHPFAVADAAYRLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGNPRDFHYLNQSNCYELDGIDDAKEYIATRKAMEVVGISLDEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSRFHLRTAAELFMCDEKALEDSLCKRVIVTRDETITKWLDPNSAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTIVHYAGDVTYQTDLFLDKNKDYVVAEHQALLGASKCSFVSCLFPPLAEESSKSSKFSSIGSRFKLQLVALLETLSATEPHYIRCVKPNNLLKPSIFENQNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVAACKRLLEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVLLRRSATHLQSACRGQLARRVFEGMRREASSIMIQRNLRMHICRKAYKEKYSSAVSIQTGMRGMAARNELRFRRRSKAAIIIQSYCRRYLAQLHYKKLKKAAITTQSAWRGRVARKELRKLKMAAKETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALQDMQLQLKETRTMFEKEREAAKKAADIIPIVKEVPVIDTAIIEKISGENEKLKALVCSLEKKIGETEKKYEEANRVSEERLKQASEAETKIIQLKTAMQRLEQKFSNIESQNQILRQQTFMTTPVKKMADHLPIAVAEKLENGSHLIEDNKIDEQLVTPVKALKRISSESEIKLSRPLFENQHENVDALVSCVMNNIGFSNGKPVAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHLAYWLSNTSALLFLLQRSLKAAGAPRKPPTSTSLFGRMTMGFRSSPSSNSLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTSLLSLCIQVPRTSKGVLRSGRSFGKDTQTNYWQSIIECLNMLLCTLKENFVPQILTQNIFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMRVLMTEDSNSAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFCGVKPADDLLENPAFQFLNE 1508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 251442 262291 + Carg04887-RA Car08g00045 152619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00045 1508 ProSiteProfiles IQ motif profile. 737 764 IPR000048 GO:0005515
Car08g00045 1508 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Car08g00045 1508 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car08g00045 1508 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car08g00045 1508 ProSiteProfiles Dilute domain profile. 1159 1454 IPR002710 -
Car08g00045 1508 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Car08g00045 1508 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Car08g00045 1508 Coils Coil 997 1048 - -
Car08g00045 1508 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Car08g00045 1508 Coils Coil 877 950 - -
Car08g00045 1508 ProSiteProfiles IQ motif profile. 831 860 IPR000048 GO:0005515
Car08g00045 1508 Pfam DIL domain 1330 1433 IPR002710 -
Car08g00045 1508 Pfam Myosin N-terminal SH3-like domain 11 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Car08g00045 1508 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Car08g00045 1508 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Car08g00045 1508 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Car08g00045 1508 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Car08g00045 1508 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Car08g00045 1508 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00045 Car17g01260 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00045 Car-Chr8:251442 Car10g00670 Car-Chr10:3442085 0 dispersed
Car06g01101 Car-Chr6:8259248 Car08g00045 Car-Chr8:251442 0 transposed
Car13g00592 Car-Chr13:7705485 Car08g00045 Car-Chr8:251442 1.13E-08 transposed
Car17g01260 Car-Chr17:9556230 Car08g00045 Car-Chr8:251442 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00045 K10357 - csv:101208630 2825.04