Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00054 ATGGCGGTTTTGAAGCTTTTGGCTCTCTGTCTTTCATTCTTCTTGTTGAACAGAGCCCCTGTTCAAGGTGGTGATTCCTTGCATTTCCCTTCGTCTGATGTTCAGCTTCTTCTGGAAAAGATCAGAGCTTCACTTGAAGGTGATACTCAGAACTTGCTTTTGTCTTCATGGAATTACTCTTTGCCACTTTGTCAATGGAGGGGACTCAAATGGGTCTTCTCTAATGGAACATCTCTGGTTTGCAGTGATTCTTCTTCTCCCCAGTGGTCTAATCTCACTCTCTTCAAAGACCCTTCTCTTCATCTTCTCTCCCTGCAACTTCCTTCTGCTAACCTCTCTGGTTCCTTGCCTAAGGAGCTTGGGGAGTTTACTATGCTCCAAAGTCTCTATCTCAACATAAACTCTTTGACTGGACCCATTCCACTTGAACTTGGTTATAGCTCCTCTCTTTCTGACATTGATTTGAGTAGCAATCTGTTGAGTGGAGCTCTTCCACCCTCGATCTGGAATCTGTGTGATAAACTTGTTTCTGTCAGGCTTGATGGGAATTCATTATCTGGGTCTCTGCCTGAGCCGGCTTTACCAGATTCCACCTGCAAGAGTTTGGAGGCTTTGGATTTTGGCAACAACCAGATTTCAGGTACTTTCCCAGAATTCATTACTAGATTTCAGGGCTTGAAAGAGCTTGATCTTGGGAACAATTTATTGTCTGGACAAATCCCTCAGAGCTTAGGCCAGTTAGAGCTGGAGAAGTTGAACCTTTCAAATAACAACTTCAGTGGAATATTGCCTGTGTTTGGTAATAACTCAAAGTTTGGTGTGGAGGCTTTTGAAGGGAACAGTCCTGGGCTTTGTGGGGAGCCTTTGAAAAGCTGTGCAGGAGCTTCTCATTTGAGTTCAGGCGCCATTGCTGGTCTTGTCATCGGCTTGATGACTGGGACGGTTGTTTTAGCTTCATTGCTTATTGGTTATATGCAAAACAAGAAGAAGAAGATAACTGAGAGTGAAGATGAGATTGAGGAAGGAGAAGATGAAGAAAATGGGGGCGGCGGTATCGGCGGCGGCACAGGTGGTGAAGGAAAGCTCATTTTGTTTCAGGGTGGTGAGCATTTGACATTGGATGATGTCTTGAATGCTACAGGGCAGGTTATGGAGAAAACAAGCTATGGCACGATATATAAAGCAAAGCTTGCTGATGGAGGTACCATTGCTCTGAGACTCCTGAGGGAAGGTAGTTGCAAAGACAGAAACACTTGCTCGTCTGTGATTAAACAATTGGGAAAGATTCGCCATGAGAATTTGATTCCTTTGAGAGCGTTCTATCAGGGAAAGAGAGGAGAAAAGCTGCTCATTTATGACTATCTGCCCATCAGAACTTTACATGATTTTCTTCATGAATCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTAGGAGGCACAAGATTGCGTTAGGCGTTGCCCGGGGACTAGCTCATCTTCACACCGGTCTTGAAGTCCCCATTACACATGGTAATGTGAGATCAAAAAATGTACTTGTGGACGACTTCTTTACAGTGAGACTGACAGAGTTTGGGCTCGACAAGCTAATGATTCCATCGGTAGCTGACGAGATTGTATCGCTTGCAAAGTCGGACGGGTACAAGGCACCAGAGCTGCAAAGGATGAAGAAATGCAATTCAAGAACAGATGTGTATGCATTTGGGATCTTGCTGTTAGAGATTCTGATTGGGAAGAAGCCAGGGAAGAGTGGAAGAAGTGGAGAGTTTGTGGATCTGCCATCAATGGTAAAAGTGGCAGTTCTGGAGGAGACAACAATGGAGGTGTTTGATGTGGAGGTTTTGAAAGGGATTAGAAGTCCCATGGAAGATGGAGTGGTTCAGGCATTGAAGCTCGCAATGGGCTGCTGTGCACCAGTGGCTTCTGTGAGACCCTCCATGGATGAAGTTGTGAAGCAGCTGGAAGAAAACAGACCAAGAAACAGATCTGCTTTGTACAGCCCAACAGAAACAAGAAGCGAAATCGGTACCCCTTTTTGA 2037 45.07 MAVLKLLALCLSFFLLNRAPVQGGDSLHFPSSDVQLLLEKIRASLEGDTQNLLLSSWNYSLPLCQWRGLKWVFSNGTSLVCSDSSSPQWSNLTLFKDPSLHLLSLQLPSANLSGSLPKELGEFTMLQSLYLNINSLTGPIPLELGYSSSLSDIDLSSNLLSGALPPSIWNLCDKLVSVRLDGNSLSGSLPEPALPDSTCKSLEALDFGNNQISGTFPEFITRFQGLKELDLGNNLLSGQIPQSLGQLELEKLNLSNNNFSGILPVFGNNSKFGVEAFEGNSPGLCGEPLKSCAGASHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKKITESEDEIEEGEDEENGGGGIGGGTGGEGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNTCSSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPIRTLHDFLHESRAGKPVLNWARRHKIALGVARGLAHLHTGLEVPITHGNVRSKNVLVDDFFTVRLTEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKSGRSGEFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEDGVVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 332173 334411 + Carg04896-RA Car08g00054 152628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00054 678 MobiDBLite consensus disorder prediction 334 353 - -
Car08g00054 678 MobiDBLite consensus disorder prediction 658 678 - -
Car08g00054 678 Gene3D Ribonuclease Inhibitor 32 196 IPR032675 -
Car08g00054 678 Gene3D Ribonuclease Inhibitor 198 296 IPR032675 -
Car08g00054 678 ProSiteProfiles Protein kinase domain profile. 378 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00054 678 Pfam Protein tyrosine and serine/threonine kinase 382 653 IPR001245 GO:0004672|GO:0006468
Car08g00054 678 Gene3D Phosphorylase Kinase; domain 1 364 454 - -
Car08g00054 678 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 6 678 - -
Car08g00054 678 Pfam Leucine rich repeat 201 259 IPR001611 GO:0005515
Car08g00054 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 6 678 - -
Car08g00054 678 Coils Coil 325 345 - -
Car08g00054 678 MobiDBLite consensus disorder prediction 659 678 - -
Car08g00054 678 Gene3D Transferase(Phosphotransferase) domain 1 456 671 - -
Car08g00054 678 SUPERFAMILY L domain-like 50 266 - -
Car08g00054 678 SUPERFAMILY Protein kinase-like (PK-like) 383 654 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00054 Car-Chr8:332173 Car04g01016 Car-Chr4:5823672 1.57E-20 dispersed
Car17g01159 Car-Chr17:8944334 Car08g00054 Car-Chr8:332173 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89029 PF07714 PK_Tyr_Ser-Thr 1.30E-25 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00054 - - cmo:103497530 1150.19